Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
PKNOX1P55347 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PKNOX1P55347 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
PKNOX1P55347 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PKNOX1P55347 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.8■□□□□ 0.44
PKNOX1P55347 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PKNOX1P55347 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PKNOX1P55347 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
PKNOX1P55347 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PKNOX1P55347 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
PKNOX1P55347 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PKNOX1P55347 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.8■□□□□ 0.44
PKNOX1P55347 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PKNOX1P55347 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PKNOX1P55347 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PKNOX1P55347 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.79■□□□□ 0.44
PKNOX1P55347 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PKNOX1P55347 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
PKNOX1P55347 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PKNOX1P55347 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PKNOX1P55347 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PKNOX1P55347 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PKNOX1P55347 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
PKNOX1P55347 UNC93B2-201ENST00000285383 730 ntBASIC17.79■□□□□ 0.44
PKNOX1P55347 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PKNOX1P55347 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PKNOX1P55347 AP003041.3-201ENST00000527151 707 ntBASIC17.79■□□□□ 0.44
PKNOX1P55347 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.79■□□□□ 0.44
PKNOX1P55347 Z99916.2-201ENST00000604037 246 ntBASIC17.79■□□□□ 0.44
PKNOX1P55347 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PKNOX1P55347 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PKNOX1P55347 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PKNOX1P55347 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PKNOX1P55347 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PKNOX1P55347 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
PKNOX1P55347 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.79■□□□□ 0.44
PKNOX1P55347 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
PKNOX1P55347 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PKNOX1P55347 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
PKNOX1P55347 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.79■□□□□ 0.44
PKNOX1P55347 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PKNOX1P55347 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PKNOX1P55347 SIRPAP1-201ENST00000448467 1770 ntBASIC17.79■□□□□ 0.44
PKNOX1P55347 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PKNOX1P55347 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PKNOX1P55347 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.79■□□□□ 0.44
PKNOX1P55347 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.78■□□□□ 0.44
PKNOX1P55347 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.78■□□□□ 0.44
PKNOX1P55347 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.78■□□□□ 0.44
PKNOX1P55347 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PKNOX1P55347 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
PKNOX1P55347 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
PKNOX1P55347 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PKNOX1P55347 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC17.78■□□□□ 0.44
PKNOX1P55347 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.78■□□□□ 0.44
PKNOX1P55347 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.78■□□□□ 0.44
PKNOX1P55347 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
PKNOX1P55347 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.78■□□□□ 0.44
PKNOX1P55347 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC17.78■□□□□ 0.44
PKNOX1P55347 CCR12P-201ENST00000446203 998 ntBASIC17.78■□□□□ 0.44
PKNOX1P55347 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC17.78■□□□□ 0.44
PKNOX1P55347 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.78■□□□□ 0.44
PKNOX1P55347 CR769767.2-201ENST00000622735 460 ntBASIC17.78■□□□□ 0.44
PKNOX1P55347 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PKNOX1P55347 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.78■□□□□ 0.44
PKNOX1P55347 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
PKNOX1P55347 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
PKNOX1P55347 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.78■□□□□ 0.44
PKNOX1P55347 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PKNOX1P55347 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PKNOX1P55347 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
PKNOX1P55347 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PKNOX1P55347 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PKNOX1P55347 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PKNOX1P55347 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PKNOX1P55347 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PKNOX1P55347 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
PKNOX1P55347 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PKNOX1P55347 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PKNOX1P55347 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PKNOX1P55347 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.77■□□□□ 0.44
PKNOX1P55347 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.77■□□□□ 0.44
PKNOX1P55347 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PKNOX1P55347 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
PKNOX1P55347 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.77■□□□□ 0.44
PKNOX1P55347 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
PKNOX1P55347 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PKNOX1P55347 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PKNOX1P55347 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.77■□□□□ 0.44
PKNOX1P55347 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PKNOX1P55347 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PKNOX1P55347 BAALC-201ENST00000297574 801 ntTSL 3 BASIC17.77■□□□□ 0.44
PKNOX1P55347 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
PKNOX1P55347 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC17.77■□□□□ 0.44
PKNOX1P55347 RBM17P1-201ENST00000453646 1190 ntBASIC17.77■□□□□ 0.44
PKNOX1P55347 USP36-216ENST00000589424 970 ntTSL 5 BASIC17.77■□□□□ 0.44
PKNOX1P55347 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PKNOX1P55347 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
PKNOX1P55347 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.77■□□□□ 0.44
PKNOX1P55347 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms