Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SMIM28A0A1B0GU29 AL096828.2-201ENST00000567259 1965 ntBASIC19.39■□□□□ 0.69
SMIM28A0A1B0GU29 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC19.39■□□□□ 0.69
SMIM28A0A1B0GU29 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC19.39■□□□□ 0.69
SMIM28A0A1B0GU29 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SMIM28A0A1B0GU29 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMIM28A0A1B0GU29 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC19.38■□□□□ 0.69
SMIM28A0A1B0GU29 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMIM28A0A1B0GU29 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMIM28A0A1B0GU29 AKR1C7P-201ENST00000305623 895 ntBASIC19.38■□□□□ 0.69
SMIM28A0A1B0GU29 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMIM28A0A1B0GU29 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
SMIM28A0A1B0GU29 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMIM28A0A1B0GU29 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SMIM28A0A1B0GU29 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
SMIM28A0A1B0GU29 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SMIM28A0A1B0GU29 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
SMIM28A0A1B0GU29 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.38■□□□□ 0.69
SMIM28A0A1B0GU29 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC19.38■□□□□ 0.69
SMIM28A0A1B0GU29 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SMIM28A0A1B0GU29 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC19.38■□□□□ 0.69
SMIM28A0A1B0GU29 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
SMIM28A0A1B0GU29 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SMIM28A0A1B0GU29 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMIM28A0A1B0GU29 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMIM28A0A1B0GU29 AL031008.1-201ENST00000619963 541 ntBASIC19.38■□□□□ 0.69
SMIM28A0A1B0GU29 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC19.38■□□□□ 0.69
SMIM28A0A1B0GU29 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SMIM28A0A1B0GU29 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMIM28A0A1B0GU29 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 AC079781.3-201ENST00000449110 356 ntBASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 DUTP2-201ENST00000519164 463 ntBASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 AC104692.2-201ENST00000603054 253 ntBASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 REXO1L6P-202ENST00000619970 1078 ntBASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SMIM28A0A1B0GU29 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMIM28A0A1B0GU29 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SMIM28A0A1B0GU29 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMIM28A0A1B0GU29 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMIM28A0A1B0GU29 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SMIM28A0A1B0GU29 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMIM28A0A1B0GU29 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SMIM28A0A1B0GU29 EMD-201ENST00000369835 966 ntTSL 3 BASIC19.36■□□□□ 0.69
SMIM28A0A1B0GU29 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC19.36■□□□□ 0.69
SMIM28A0A1B0GU29 DANCR-204ENST00000444958 709 ntTSL 3 BASIC19.36■□□□□ 0.69
SMIM28A0A1B0GU29 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SMIM28A0A1B0GU29 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC19.36■□□□□ 0.69
SMIM28A0A1B0GU29 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC19.36■□□□□ 0.69
SMIM28A0A1B0GU29 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC19.36■□□□□ 0.69
SMIM28A0A1B0GU29 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMIM28A0A1B0GU29 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMIM28A0A1B0GU29 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMIM28A0A1B0GU29 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SMIM28A0A1B0GU29 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 POR-209ENST00000439269 1858 ntTSL 2 BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms