Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC21.67■■□□□ 1.06
UPF3BQ9BZI7 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
UPF3BQ9BZI7 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
UPF3BQ9BZI7 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC21.67■■□□□ 1.06
UPF3BQ9BZI7 GNE-204ENST00000539208 2190 ntTSL 2 BASIC21.67■■□□□ 1.06
UPF3BQ9BZI7 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC21.67■■□□□ 1.06
UPF3BQ9BZI7 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
UPF3BQ9BZI7 GNAS-203ENST00000306120 1878 ntBASIC21.67■■□□□ 1.06
UPF3BQ9BZI7 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC21.67■■□□□ 1.06
UPF3BQ9BZI7 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC21.67■■□□□ 1.06
UPF3BQ9BZI7 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC21.67■■□□□ 1.06
UPF3BQ9BZI7 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
UPF3BQ9BZI7 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
UPF3BQ9BZI7 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
UPF3BQ9BZI7 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
UPF3BQ9BZI7 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
UPF3BQ9BZI7 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC21.67■■□□□ 1.06
UPF3BQ9BZI7 Telomerase-vert.1-201ENST00000363312 438 ntBASIC21.67■■□□□ 1.06
UPF3BQ9BZI7 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
UPF3BQ9BZI7 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
UPF3BQ9BZI7 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
UPF3BQ9BZI7 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC21.67■■□□□ 1.06
UPF3BQ9BZI7 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC21.67■■□□□ 1.06
UPF3BQ9BZI7 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
UPF3BQ9BZI7 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
UPF3BQ9BZI7 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
UPF3BQ9BZI7 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
UPF3BQ9BZI7 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
UPF3BQ9BZI7 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
UPF3BQ9BZI7 HTR7P1-202ENST00000624664 4411 ntBASIC21.66■■□□□ 1.06
UPF3BQ9BZI7 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC21.66■■□□□ 1.06
UPF3BQ9BZI7 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC21.66■■□□□ 1.06
UPF3BQ9BZI7 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
UPF3BQ9BZI7 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
UPF3BQ9BZI7 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
UPF3BQ9BZI7 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
UPF3BQ9BZI7 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
UPF3BQ9BZI7 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
UPF3BQ9BZI7 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
UPF3BQ9BZI7 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
UPF3BQ9BZI7 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
UPF3BQ9BZI7 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
UPF3BQ9BZI7 CRAT-202ENST00000393384 973 ntTSL 2 BASIC21.66■■□□□ 1.06
UPF3BQ9BZI7 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
UPF3BQ9BZI7 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
UPF3BQ9BZI7 AC128688.1-201ENST00000487626 519 ntBASIC21.66■■□□□ 1.06
UPF3BQ9BZI7 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
UPF3BQ9BZI7 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC21.66■■□□□ 1.06
UPF3BQ9BZI7 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC21.66■■□□□ 1.06
UPF3BQ9BZI7 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
UPF3BQ9BZI7 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
UPF3BQ9BZI7 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
UPF3BQ9BZI7 HLA-DQB1-201ENST00000374943 1656 ntBASIC21.66■■□□□ 1.06
UPF3BQ9BZI7 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
UPF3BQ9BZI7 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
UPF3BQ9BZI7 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC21.66■■□□□ 1.06
UPF3BQ9BZI7 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
UPF3BQ9BZI7 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
UPF3BQ9BZI7 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC21.65■■□□□ 1.06
UPF3BQ9BZI7 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
UPF3BQ9BZI7 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
UPF3BQ9BZI7 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
UPF3BQ9BZI7 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
UPF3BQ9BZI7 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC21.65■■□□□ 1.06
UPF3BQ9BZI7 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
UPF3BQ9BZI7 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC21.65■■□□□ 1.06
UPF3BQ9BZI7 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
UPF3BQ9BZI7 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
UPF3BQ9BZI7 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
UPF3BQ9BZI7 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
UPF3BQ9BZI7 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
UPF3BQ9BZI7 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
UPF3BQ9BZI7 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
UPF3BQ9BZI7 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC21.65■■□□□ 1.06
UPF3BQ9BZI7 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC21.65■■□□□ 1.06
UPF3BQ9BZI7 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC21.65■■□□□ 1.06
UPF3BQ9BZI7 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
UPF3BQ9BZI7 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC21.64■■□□□ 1.06
UPF3BQ9BZI7 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
UPF3BQ9BZI7 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
UPF3BQ9BZI7 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
UPF3BQ9BZI7 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC21.64■■□□□ 1.06
UPF3BQ9BZI7 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
UPF3BQ9BZI7 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
UPF3BQ9BZI7 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
UPF3BQ9BZI7 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
UPF3BQ9BZI7 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.06
UPF3BQ9BZI7 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC21.64■■□□□ 1.06
UPF3BQ9BZI7 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
UPF3BQ9BZI7 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
UPF3BQ9BZI7 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
UPF3BQ9BZI7 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
UPF3BQ9BZI7 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
UPF3BQ9BZI7 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
UPF3BQ9BZI7 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
UPF3BQ9BZI7 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
UPF3BQ9BZI7 GRAMD4P1-201ENST00000435181 1110 ntBASIC21.64■■□□□ 1.05
UPF3BQ9BZI7 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC21.64■■□□□ 1.05
UPF3BQ9BZI7 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
UPF3BQ9BZI7 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms