Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TIMP4Q99727 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
TIMP4Q99727 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TIMP4Q99727 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC16.65■□□□□ 0.26
TIMP4Q99727 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC16.65■□□□□ 0.26
TIMP4Q99727 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
TIMP4Q99727 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
TIMP4Q99727 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TIMP4Q99727 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC16.65■□□□□ 0.26
TIMP4Q99727 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC16.65■□□□□ 0.26
TIMP4Q99727 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC16.65■□□□□ 0.26
TIMP4Q99727 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC16.65■□□□□ 0.26
TIMP4Q99727 SPEG-225ENST00000617028 815 ntTSL 5 BASIC16.65■□□□□ 0.26
TIMP4Q99727 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TIMP4Q99727 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TIMP4Q99727 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TIMP4Q99727 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TIMP4Q99727 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TIMP4Q99727 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TIMP4Q99727 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TIMP4Q99727 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
TIMP4Q99727 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC16.65■□□□□ 0.26
TIMP4Q99727 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TIMP4Q99727 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
TIMP4Q99727 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TIMP4Q99727 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TIMP4Q99727 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC16.64■□□□□ 0.26
TIMP4Q99727 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TIMP4Q99727 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TIMP4Q99727 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC16.64■□□□□ 0.25
TIMP4Q99727 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC16.64■□□□□ 0.25
TIMP4Q99727 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
TIMP4Q99727 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
TIMP4Q99727 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC16.64■□□□□ 0.25
TIMP4Q99727 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TIMP4Q99727 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
TIMP4Q99727 MIR662-201ENST00000384847 95 ntBASIC16.64■□□□□ 0.25
TIMP4Q99727 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC16.64■□□□□ 0.25
TIMP4Q99727 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC16.64■□□□□ 0.25
TIMP4Q99727 AC011498.5-201ENST00000592027 486 ntBASIC16.64■□□□□ 0.25
TIMP4Q99727 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
TIMP4Q99727 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
TIMP4Q99727 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.64■□□□□ 0.25
TIMP4Q99727 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TIMP4Q99727 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC16.64■□□□□ 0.25
TIMP4Q99727 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
TIMP4Q99727 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
TIMP4Q99727 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TIMP4Q99727 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
TIMP4Q99727 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
TIMP4Q99727 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC16.64■□□□□ 0.25
TIMP4Q99727 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC16.64■□□□□ 0.25
TIMP4Q99727 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
TIMP4Q99727 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC16.64■□□□□ 0.25
TIMP4Q99727 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC16.64■□□□□ 0.25
TIMP4Q99727 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
TIMP4Q99727 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TIMP4Q99727 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TIMP4Q99727 AC093677.2-201ENST00000600169 1863 ntBASIC16.63■□□□□ 0.25
TIMP4Q99727 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TIMP4Q99727 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TIMP4Q99727 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TIMP4Q99727 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TIMP4Q99727 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC16.63■□□□□ 0.25
TIMP4Q99727 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC16.63■□□□□ 0.25
TIMP4Q99727 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC16.63■□□□□ 0.25
TIMP4Q99727 PVRIG2P-201ENST00000435460 978 ntBASIC16.63■□□□□ 0.25
TIMP4Q99727 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC16.63■□□□□ 0.25
TIMP4Q99727 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
TIMP4Q99727 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC16.63■□□□□ 0.25
TIMP4Q99727 KRT18P56-201ENST00000507275 550 ntBASIC16.63■□□□□ 0.25
TIMP4Q99727 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC16.63■□□□□ 0.25
TIMP4Q99727 NAA38-203ENST00000575071 553 ntTSL 2 BASIC16.63■□□□□ 0.25
TIMP4Q99727 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC16.63■□□□□ 0.25
TIMP4Q99727 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.63■□□□□ 0.25
TIMP4Q99727 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TIMP4Q99727 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
TIMP4Q99727 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC16.63■□□□□ 0.25
TIMP4Q99727 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC16.63■□□□□ 0.25
TIMP4Q99727 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TIMP4Q99727 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
TIMP4Q99727 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TIMP4Q99727 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC16.63■□□□□ 0.25
TIMP4Q99727 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TIMP4Q99727 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TIMP4Q99727 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
TIMP4Q99727 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TIMP4Q99727 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC16.62■□□□□ 0.25
TIMP4Q99727 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TIMP4Q99727 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TIMP4Q99727 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TIMP4Q99727 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
TIMP4Q99727 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TIMP4Q99727 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
TIMP4Q99727 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TIMP4Q99727 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.62■□□□□ 0.25
TIMP4Q99727 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC16.62■□□□□ 0.25
TIMP4Q99727 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TIMP4Q99727 LINC00896-202ENST00000609602 2128 ntBASIC16.62■□□□□ 0.25
TIMP4Q99727 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms