Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
KRT40Q6A162 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC21.04■□□□□ 0.96
KRT40Q6A162 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC21.04■□□□□ 0.96
KRT40Q6A162 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
KRT40Q6A162 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC21.04■□□□□ 0.96
KRT40Q6A162 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC21.04■□□□□ 0.96
KRT40Q6A162 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
KRT40Q6A162 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
KRT40Q6A162 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
KRT40Q6A162 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
KRT40Q6A162 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
KRT40Q6A162 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC21.04■□□□□ 0.96
KRT40Q6A162 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
KRT40Q6A162 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
KRT40Q6A162 COX11P1-201ENST00000489116 835 ntBASIC21.04■□□□□ 0.96
KRT40Q6A162 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC21.04■□□□□ 0.96
KRT40Q6A162 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC21.04■□□□□ 0.96
KRT40Q6A162 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC21.04■□□□□ 0.96
KRT40Q6A162 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
KRT40Q6A162 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
KRT40Q6A162 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC21.04■□□□□ 0.96
KRT40Q6A162 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
KRT40Q6A162 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC21.04■□□□□ 0.96
KRT40Q6A162 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
KRT40Q6A162 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
KRT40Q6A162 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
KRT40Q6A162 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
KRT40Q6A162 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC21.03■□□□□ 0.96
KRT40Q6A162 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
KRT40Q6A162 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
KRT40Q6A162 PBK-203ENST00000522944 1499 ntTSL 2 BASIC21.03■□□□□ 0.96
KRT40Q6A162 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
KRT40Q6A162 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
KRT40Q6A162 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
KRT40Q6A162 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
KRT40Q6A162 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
KRT40Q6A162 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
KRT40Q6A162 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC21.03■□□□□ 0.96
KRT40Q6A162 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC21.03■□□□□ 0.96
KRT40Q6A162 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC21.03■□□□□ 0.96
KRT40Q6A162 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
KRT40Q6A162 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC21.03■□□□□ 0.96
KRT40Q6A162 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
KRT40Q6A162 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC21.03■□□□□ 0.96
KRT40Q6A162 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
KRT40Q6A162 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
KRT40Q6A162 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
KRT40Q6A162 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC21.03■□□□□ 0.96
KRT40Q6A162 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
KRT40Q6A162 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
KRT40Q6A162 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
KRT40Q6A162 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC21.03■□□□□ 0.96
KRT40Q6A162 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
KRT40Q6A162 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
KRT40Q6A162 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
KRT40Q6A162 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC21.02■□□□□ 0.96
KRT40Q6A162 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
KRT40Q6A162 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
KRT40Q6A162 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
KRT40Q6A162 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC21.02■□□□□ 0.96
KRT40Q6A162 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
KRT40Q6A162 AP000997.3-201ENST00000623333 2250 ntBASIC21.02■□□□□ 0.96
KRT40Q6A162 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC21.02■□□□□ 0.96
KRT40Q6A162 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC21.02■□□□□ 0.96
KRT40Q6A162 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
KRT40Q6A162 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
KRT40Q6A162 PVRIG2P-201ENST00000435460 978 ntBASIC21.02■□□□□ 0.96
KRT40Q6A162 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC21.02■□□□□ 0.96
KRT40Q6A162 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
KRT40Q6A162 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
KRT40Q6A162 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
KRT40Q6A162 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC21.02■□□□□ 0.96
KRT40Q6A162 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
KRT40Q6A162 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC21.02■□□□□ 0.96
KRT40Q6A162 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC21.02■□□□□ 0.96
KRT40Q6A162 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC21.02■□□□□ 0.96
KRT40Q6A162 AC140113.3-201ENST00000605663 199 ntBASIC21.02■□□□□ 0.96
KRT40Q6A162 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
KRT40Q6A162 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
KRT40Q6A162 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC21.02■□□□□ 0.96
KRT40Q6A162 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC21.02■□□□□ 0.96
KRT40Q6A162 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
KRT40Q6A162 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
KRT40Q6A162 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
KRT40Q6A162 FLJ13224-201ENST00000313737 1514 ntBASIC21.02■□□□□ 0.96
KRT40Q6A162 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
KRT40Q6A162 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
KRT40Q6A162 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.95
KRT40Q6A162 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
KRT40Q6A162 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC21.02■□□□□ 0.95
KRT40Q6A162 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
KRT40Q6A162 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
KRT40Q6A162 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
KRT40Q6A162 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC21.01■□□□□ 0.95
KRT40Q6A162 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
KRT40Q6A162 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC21.01■□□□□ 0.95
KRT40Q6A162 STK4-201ENST00000372801 2038 ntTSL 2 BASIC21.01■□□□□ 0.95
KRT40Q6A162 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC21.01■□□□□ 0.95
KRT40Q6A162 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
KRT40Q6A162 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms