Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC23.85■■□□□ 1.41
COL18A1P39060 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC23.85■■□□□ 1.41
COL18A1P39060 LINC02084-201ENST00000606069 1096 ntBASIC23.85■■□□□ 1.41
COL18A1P39060 PGM5P2-202ENST00000637225 1043 ntBASIC23.85■■□□□ 1.41
COL18A1P39060 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC23.85■■□□□ 1.41
COL18A1P39060 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC23.85■■□□□ 1.41
COL18A1P39060 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC23.85■■□□□ 1.41
COL18A1P39060 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
COL18A1P39060 ADM-208ENST00000534464 1640 ntTSL 2 BASIC23.85■■□□□ 1.41
COL18A1P39060 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
COL18A1P39060 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
COL18A1P39060 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
COL18A1P39060 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
COL18A1P39060 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC23.84■■□□□ 1.41
COL18A1P39060 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC23.84■■□□□ 1.41
COL18A1P39060 CD9-202ENST00000382515 1229 ntTSL 5 BASIC23.84■■□□□ 1.41
COL18A1P39060 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC23.84■■□□□ 1.41
COL18A1P39060 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
COL18A1P39060 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
COL18A1P39060 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC23.84■■□□□ 1.41
COL18A1P39060 AC005332.7-201ENST00000614046 2005 ntBASIC23.84■■□□□ 1.41
COL18A1P39060 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
COL18A1P39060 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC23.84■■□□□ 1.41
COL18A1P39060 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
COL18A1P39060 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
COL18A1P39060 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
COL18A1P39060 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC23.83■■□□□ 1.41
COL18A1P39060 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC23.83■■□□□ 1.41
COL18A1P39060 TCAP-202ENST00000578283 583 ntTSL 5 BASIC23.83■■□□□ 1.41
COL18A1P39060 AC092865.6-201ENST00000642101 219 ntBASIC23.83■■□□□ 1.41
COL18A1P39060 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
COL18A1P39060 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
COL18A1P39060 AL353593.2-201ENST00000602529 1483 ntBASIC23.83■■□□□ 1.41
COL18A1P39060 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
COL18A1P39060 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC23.83■■□□□ 1.41
COL18A1P39060 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
COL18A1P39060 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
COL18A1P39060 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
COL18A1P39060 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
COL18A1P39060 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC23.83■■□□□ 1.4
COL18A1P39060 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC23.83■■□□□ 1.4
COL18A1P39060 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
COL18A1P39060 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC23.82■■□□□ 1.4
COL18A1P39060 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC23.82■■□□□ 1.4
COL18A1P39060 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
COL18A1P39060 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
COL18A1P39060 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC23.82■■□□□ 1.4
COL18A1P39060 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC23.82■■□□□ 1.4
COL18A1P39060 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC23.82■■□□□ 1.4
COL18A1P39060 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC23.82■■□□□ 1.4
COL18A1P39060 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
COL18A1P39060 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC23.82■■□□□ 1.4
COL18A1P39060 AC018845.2-201ENST00000568326 409 ntBASIC23.82■■□□□ 1.4
COL18A1P39060 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC23.82■■□□□ 1.4
COL18A1P39060 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC23.82■■□□□ 1.4
COL18A1P39060 AC027612.4-201ENST00000605371 583 ntBASIC23.82■■□□□ 1.4
COL18A1P39060 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
COL18A1P39060 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
COL18A1P39060 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
COL18A1P39060 ESPNP-201ENST00000270691 2015 ntBASIC23.82■■□□□ 1.4
COL18A1P39060 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
COL18A1P39060 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC23.82■■□□□ 1.4
COL18A1P39060 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL18A1P39060 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL18A1P39060 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL18A1P39060 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
COL18A1P39060 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL18A1P39060 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC23.81■■□□□ 1.4
COL18A1P39060 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC23.81■■□□□ 1.4
COL18A1P39060 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC23.81■■□□□ 1.4
COL18A1P39060 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC23.81■■□□□ 1.4
COL18A1P39060 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL18A1P39060 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL18A1P39060 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL18A1P39060 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL18A1P39060 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC23.81■■□□□ 1.4
COL18A1P39060 HTR5BP-201ENST00000430851 1154 ntBASIC23.8■■□□□ 1.4
COL18A1P39060 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC23.8■■□□□ 1.4
COL18A1P39060 RFPL4AP1-201ENST00000530883 850 ntBASIC23.8■■□□□ 1.4
COL18A1P39060 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC23.8■■□□□ 1.4
COL18A1P39060 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL18A1P39060 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC23.8■■□□□ 1.4
COL18A1P39060 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
COL18A1P39060 AC006504.4-201ENST00000592118 1568 ntBASIC23.8■■□□□ 1.4
COL18A1P39060 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL18A1P39060 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL18A1P39060 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
COL18A1P39060 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL18A1P39060 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
COL18A1P39060 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC23.8■■□□□ 1.4
COL18A1P39060 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
COL18A1P39060 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
COL18A1P39060 KLF4P1-201ENST00000412782 1185 ntBASIC23.8■■□□□ 1.4
COL18A1P39060 AC254562.1-201ENST00000417586 456 ntBASIC23.8■■□□□ 1.4
COL18A1P39060 HCG4B-203ENST00000450128 991 ntBASIC23.8■■□□□ 1.4
COL18A1P39060 CFL1-202ENST00000524553 860 ntTSL 2 BASIC23.8■■□□□ 1.4
COL18A1P39060 RIN3-211ENST00000557762 517 ntTSL 3 BASIC23.8■■□□□ 1.4
COL18A1P39060 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC23.8■■□□□ 1.4
COL18A1P39060 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC23.8■■□□□ 1.4
COL18A1P39060 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC23.8■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms