Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PDLIM1O00151 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
PDLIM1O00151 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PDLIM1O00151 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC17.32■□□□□ 0.36
PDLIM1O00151 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.32■□□□□ 0.36
PDLIM1O00151 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PDLIM1O00151 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PDLIM1O00151 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PDLIM1O00151 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.32■□□□□ 0.36
PDLIM1O00151 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
PDLIM1O00151 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
PDLIM1O00151 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PDLIM1O00151 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
PDLIM1O00151 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
PDLIM1O00151 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PDLIM1O00151 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC17.32■□□□□ 0.36
PDLIM1O00151 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PDLIM1O00151 BAALC-201ENST00000297574 801 ntTSL 3 BASIC17.32■□□□□ 0.36
PDLIM1O00151 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
PDLIM1O00151 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
PDLIM1O00151 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
PDLIM1O00151 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
PDLIM1O00151 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC17.32■□□□□ 0.36
PDLIM1O00151 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC17.32■□□□□ 0.36
PDLIM1O00151 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC17.32■□□□□ 0.36
PDLIM1O00151 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC17.32■□□□□ 0.36
PDLIM1O00151 AC068587.9-201ENST00000641814 219 ntBASIC17.32■□□□□ 0.36
PDLIM1O00151 AC022211.2-201ENST00000585075 2527 ntBASIC17.32■□□□□ 0.36
PDLIM1O00151 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
PDLIM1O00151 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PDLIM1O00151 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PDLIM1O00151 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PDLIM1O00151 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.32■□□□□ 0.36
PDLIM1O00151 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.32■□□□□ 0.36
PDLIM1O00151 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PDLIM1O00151 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC17.32■□□□□ 0.36
PDLIM1O00151 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
PDLIM1O00151 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
PDLIM1O00151 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PDLIM1O00151 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC17.31■□□□□ 0.36
PDLIM1O00151 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PDLIM1O00151 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
PDLIM1O00151 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
PDLIM1O00151 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PDLIM1O00151 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.31■□□□□ 0.36
PDLIM1O00151 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PDLIM1O00151 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PDLIM1O00151 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
PDLIM1O00151 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC17.31■□□□□ 0.36
PDLIM1O00151 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC17.31■□□□□ 0.36
PDLIM1O00151 KRT16P5-201ENST00000455284 522 ntBASIC17.31■□□□□ 0.36
PDLIM1O00151 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PDLIM1O00151 SPIB-206ENST00000596074 847 ntTSL 2 BASIC17.31■□□□□ 0.36
PDLIM1O00151 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC17.31■□□□□ 0.36
PDLIM1O00151 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PDLIM1O00151 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.31■□□□□ 0.36
PDLIM1O00151 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PDLIM1O00151 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.31■□□□□ 0.36
PDLIM1O00151 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PDLIM1O00151 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
PDLIM1O00151 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PDLIM1O00151 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PDLIM1O00151 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC17.31■□□□□ 0.36
PDLIM1O00151 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
PDLIM1O00151 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PDLIM1O00151 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PDLIM1O00151 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
PDLIM1O00151 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PDLIM1O00151 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
PDLIM1O00151 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
PDLIM1O00151 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC17.3■□□□□ 0.36
PDLIM1O00151 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PDLIM1O00151 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.3■□□□□ 0.36
PDLIM1O00151 MME-217ENST00000616757 1315 ntTSL 5 BASIC17.3■□□□□ 0.36
PDLIM1O00151 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PDLIM1O00151 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PDLIM1O00151 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
PDLIM1O00151 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
PDLIM1O00151 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PDLIM1O00151 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PDLIM1O00151 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC17.3■□□□□ 0.36
PDLIM1O00151 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC17.3■□□□□ 0.36
PDLIM1O00151 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.3■□□□□ 0.36
PDLIM1O00151 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC17.3■□□□□ 0.36
PDLIM1O00151 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
PDLIM1O00151 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC17.3■□□□□ 0.36
PDLIM1O00151 USP36-216ENST00000589424 970 ntTSL 5 BASIC17.3■□□□□ 0.36
PDLIM1O00151 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC17.3■□□□□ 0.36
PDLIM1O00151 PCDH8P1-201ENST00000428983 2773 ntBASIC17.3■□□□□ 0.36
PDLIM1O00151 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PDLIM1O00151 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
PDLIM1O00151 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PDLIM1O00151 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.29■□□□□ 0.36
PDLIM1O00151 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PDLIM1O00151 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
PDLIM1O00151 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.29■□□□□ 0.36
PDLIM1O00151 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC17.29■□□□□ 0.36
PDLIM1O00151 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PDLIM1O00151 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PDLIM1O00151 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms