Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 AC091607.1-201ENST00000490318 1060 ntBASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
TRAV40A0A0B4J280 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 BX323043.1-201ENST00000641006 1765 ntBASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 SNCG-201ENST00000348795 684 ntTSL 2 BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 IGHV3-47-201ENST00000425060 335 ntBASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 ANKRD20A8P-203ENST00000641373 517 ntBASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
TRAV40A0A0B4J280 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
TRAV40A0A0B4J280 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC14.77□□□□□ -0.04
TRAV40A0A0B4J280 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
TRAV40A0A0B4J280 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
TRAV40A0A0B4J280 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC14.77□□□□□ -0.04
TRAV40A0A0B4J280 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
TRAV40A0A0B4J280 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
TRAV40A0A0B4J280 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
TRAV40A0A0B4J280 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
TRAV40A0A0B4J280 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
TRAV40A0A0B4J280 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC14.77□□□□□ -0.05
TRAV40A0A0B4J280 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC14.77□□□□□ -0.05
TRAV40A0A0B4J280 EMBP1-201ENST00000458200 901 ntBASIC14.77□□□□□ -0.05
TRAV40A0A0B4J280 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
TRAV40A0A0B4J280 AC096582.2-201ENST00000510860 516 ntBASIC14.77□□□□□ -0.05
TRAV40A0A0B4J280 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC14.77□□□□□ -0.05
TRAV40A0A0B4J280 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC14.77□□□□□ -0.05
TRAV40A0A0B4J280 TPM1-218ENST00000559281 851 ntTSL 5 BASIC14.77□□□□□ -0.05
TRAV40A0A0B4J280 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
TRAV40A0A0B4J280 TBCB-205ENST00000585746 875 ntTSL 3 BASIC14.77□□□□□ -0.05
TRAV40A0A0B4J280 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
TRAV40A0A0B4J280 GXYLT1P4-201ENST00000613576 1192 ntBASIC14.77□□□□□ -0.05
TRAV40A0A0B4J280 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
TRAV40A0A0B4J280 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
TRAV40A0A0B4J280 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC14.77□□□□□ -0.05
TRAV40A0A0B4J280 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
TRAV40A0A0B4J280 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
TRAV40A0A0B4J280 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
TRAV40A0A0B4J280 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
TRAV40A0A0B4J280 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
TRAV40A0A0B4J280 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
TRAV40A0A0B4J280 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
TRAV40A0A0B4J280 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC14.77□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms