Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC18.98■□□□□ 0.63
USP3Q9Y6I4 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
USP3Q9Y6I4 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP3Q9Y6I4 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
USP3Q9Y6I4 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
USP3Q9Y6I4 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP3Q9Y6I4 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP3Q9Y6I4 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP3Q9Y6I4 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC18.97■□□□□ 0.63
USP3Q9Y6I4 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC18.97■□□□□ 0.63
USP3Q9Y6I4 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC18.97■□□□□ 0.63
USP3Q9Y6I4 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
USP3Q9Y6I4 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
USP3Q9Y6I4 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP3Q9Y6I4 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP3Q9Y6I4 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP3Q9Y6I4 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
USP3Q9Y6I4 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
USP3Q9Y6I4 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC18.97■□□□□ 0.63
USP3Q9Y6I4 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
USP3Q9Y6I4 KRT18P56-201ENST00000507275 550 ntBASIC18.97■□□□□ 0.63
USP3Q9Y6I4 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC18.97■□□□□ 0.63
USP3Q9Y6I4 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC18.97■□□□□ 0.63
USP3Q9Y6I4 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.97■□□□□ 0.63
USP3Q9Y6I4 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP3Q9Y6I4 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP3Q9Y6I4 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.97■□□□□ 0.63
USP3Q9Y6I4 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
USP3Q9Y6I4 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
USP3Q9Y6I4 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.97■□□□□ 0.63
USP3Q9Y6I4 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP3Q9Y6I4 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP3Q9Y6I4 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.96■□□□□ 0.63
USP3Q9Y6I4 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.96■□□□□ 0.63
USP3Q9Y6I4 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP3Q9Y6I4 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP3Q9Y6I4 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.96■□□□□ 0.63
USP3Q9Y6I4 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.96■□□□□ 0.63
USP3Q9Y6I4 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP3Q9Y6I4 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC18.96■□□□□ 0.63
USP3Q9Y6I4 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP3Q9Y6I4 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
USP3Q9Y6I4 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP3Q9Y6I4 AC246785.2-201ENST00000432512 513 ntBASIC18.96■□□□□ 0.63
USP3Q9Y6I4 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP3Q9Y6I4 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
USP3Q9Y6I4 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC18.96■□□□□ 0.63
USP3Q9Y6I4 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
USP3Q9Y6I4 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
USP3Q9Y6I4 POR-209ENST00000439269 1858 ntTSL 2 BASIC18.96■□□□□ 0.63
USP3Q9Y6I4 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP3Q9Y6I4 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP3Q9Y6I4 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC18.96■□□□□ 0.63
USP3Q9Y6I4 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
USP3Q9Y6I4 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC18.96■□□□□ 0.63
USP3Q9Y6I4 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18.96■□□□□ 0.63
USP3Q9Y6I4 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USP3Q9Y6I4 AC233702.3-201ENST00000578656 1387 ntBASIC18.95■□□□□ 0.62
USP3Q9Y6I4 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
USP3Q9Y6I4 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.95■□□□□ 0.62
USP3Q9Y6I4 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
USP3Q9Y6I4 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP3Q9Y6I4 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USP3Q9Y6I4 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP3Q9Y6I4 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC18.95■□□□□ 0.62
USP3Q9Y6I4 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC18.95■□□□□ 0.62
USP3Q9Y6I4 TOB2P1-201ENST00000469761 992 ntBASIC18.95■□□□□ 0.62
USP3Q9Y6I4 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP3Q9Y6I4 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC18.95■□□□□ 0.62
USP3Q9Y6I4 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USP3Q9Y6I4 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC18.95■□□□□ 0.62
USP3Q9Y6I4 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC18.95■□□□□ 0.62
USP3Q9Y6I4 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USP3Q9Y6I4 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC18.95■□□□□ 0.62
USP3Q9Y6I4 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP3Q9Y6I4 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USP3Q9Y6I4 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.95■□□□□ 0.62
USP3Q9Y6I4 AC007613.1-201ENST00000572811 2597 ntBASIC18.95■□□□□ 0.62
USP3Q9Y6I4 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.95■□□□□ 0.62
USP3Q9Y6I4 AL096828.2-201ENST00000567259 1965 ntBASIC18.95■□□□□ 0.62
USP3Q9Y6I4 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USP3Q9Y6I4 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP3Q9Y6I4 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
USP3Q9Y6I4 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.95■□□□□ 0.62
USP3Q9Y6I4 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.94■□□□□ 0.62
USP3Q9Y6I4 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP3Q9Y6I4 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP3Q9Y6I4 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC18.94■□□□□ 0.62
USP3Q9Y6I4 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP3Q9Y6I4 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms