Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 FUOM-202ENST00000368551 628 ntTSL 3 BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 RPSAP43-201ENST00000402237 625 ntBASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 GPX1P2-201ENST00000429271 606 ntBASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 KRT18P3-201ENST00000451602 1288 ntBASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 AC092910.1-201ENST00000482027 1129 ntBASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 NMU-202ENST00000505262 693 ntTSL 3 BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 MIR3687-2-201ENST00000577708 61 ntBASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 MIR3687-1-201ENST00000614492 61 ntBASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 AC055717.3-201ENST00000622967 595 ntBASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDHGA1Q9Y5H4 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHGA1Q9Y5H4 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC17.42■□□□□ 0.38
PCDHGA1Q9Y5H4 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHGA1Q9Y5H4 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
PCDHGA1Q9Y5H4 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHGA1Q9Y5H4 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHGA1Q9Y5H4 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
PCDHGA1Q9Y5H4 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.42■□□□□ 0.38
PCDHGA1Q9Y5H4 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHGA1Q9Y5H4 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHGA1Q9Y5H4 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHGA1Q9Y5H4 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.42■□□□□ 0.38
PCDHGA1Q9Y5H4 RNA5SP415-201ENST00000517246 115 ntBASIC17.42■□□□□ 0.38
PCDHGA1Q9Y5H4 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.42■□□□□ 0.38
PCDHGA1Q9Y5H4 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC17.42■□□□□ 0.38
PCDHGA1Q9Y5H4 AP001160.2-201ENST00000596071 487 ntBASIC17.42■□□□□ 0.38
PCDHGA1Q9Y5H4 AC008735.5-201ENST00000623544 497 ntBASIC17.42■□□□□ 0.38
PCDHGA1Q9Y5H4 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC17.42■□□□□ 0.38
PCDHGA1Q9Y5H4 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.42■□□□□ 0.38
PCDHGA1Q9Y5H4 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHGA1Q9Y5H4 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC17.42■□□□□ 0.38
PCDHGA1Q9Y5H4 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHGA1Q9Y5H4 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHGA1Q9Y5H4 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHGA1Q9Y5H4 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHGA1Q9Y5H4 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHGA1Q9Y5H4 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHGA1Q9Y5H4 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
PCDHGA1Q9Y5H4 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHGA1Q9Y5H4 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHGA1Q9Y5H4 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.41■□□□□ 0.38
PCDHGA1Q9Y5H4 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHGA1Q9Y5H4 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.41■□□□□ 0.38
PCDHGA1Q9Y5H4 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC17.41■□□□□ 0.38
PCDHGA1Q9Y5H4 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
PCDHGA1Q9Y5H4 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHGA1Q9Y5H4 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHGA1Q9Y5H4 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.41■□□□□ 0.38
PCDHGA1Q9Y5H4 PMS2P2-201ENST00000425039 1128 ntBASIC17.41■□□□□ 0.38
PCDHGA1Q9Y5H4 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC17.41■□□□□ 0.38
PCDHGA1Q9Y5H4 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.41■□□□□ 0.38
PCDHGA1Q9Y5H4 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
PCDHGA1Q9Y5H4 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHGA1Q9Y5H4 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
PCDHGA1Q9Y5H4 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.41■□□□□ 0.38
PCDHGA1Q9Y5H4 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHGA1Q9Y5H4 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHGA1Q9Y5H4 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHGA1Q9Y5H4 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHGA1Q9Y5H4 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHGA1Q9Y5H4 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
PCDHGA1Q9Y5H4 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
PCDHGA1Q9Y5H4 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
PCDHGA1Q9Y5H4 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHGA1Q9Y5H4 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHGA1Q9Y5H4 AL020996.1-203ENST00000536896 2307 ntBASIC17.41■□□□□ 0.38
PCDHGA1Q9Y5H4 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHGA1Q9Y5H4 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms