Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.09
CLRN3Q8NCR9 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CLRN3Q8NCR9 POLL-206ENST00000370172 2308 ntTSL 2 BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 AC136469.2-201ENST00000623944 1028 ntBASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 AL499627.1-201ENST00000569373 2188 ntBASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 AC063926.3-201ENST00000624734 5658 ntBASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC14.5□□□□□ -0.09
CLRN3Q8NCR9 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 NFIC-211ENST00000641145 8399 ntBASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 PAUPAR-201ENST00000630360 2965 ntBASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
CLRN3Q8NCR9 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 507.5 ms