Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL4A4P53420 MIR3687-1-201ENST00000614492 61 ntBASIC19.37■□□□□ 0.69
COL4A4P53420 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL4A4P53420 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
COL4A4P53420 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL4A4P53420 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL4A4P53420 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL4A4P53420 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL4A4P53420 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL4A4P53420 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
COL4A4P53420 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC19.37■□□□□ 0.69
COL4A4P53420 RPS2P28-201ENST00000314255 741 ntBASIC19.36■□□□□ 0.69
COL4A4P53420 KIRREL3-AS3-201ENST00000404882 831 ntBASIC19.36■□□□□ 0.69
COL4A4P53420 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC19.36■□□□□ 0.69
COL4A4P53420 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
COL4A4P53420 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL4A4P53420 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL4A4P53420 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL4A4P53420 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.36■□□□□ 0.69
COL4A4P53420 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
COL4A4P53420 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL4A4P53420 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL4A4P53420 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL4A4P53420 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
COL4A4P53420 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC19.36■□□□□ 0.69
COL4A4P53420 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC19.36■□□□□ 0.69
COL4A4P53420 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC19.36■□□□□ 0.69
COL4A4P53420 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC19.36■□□□□ 0.69
COL4A4P53420 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC19.36■□□□□ 0.69
COL4A4P53420 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL4A4P53420 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
COL4A4P53420 RFPL4AP1-201ENST00000530883 850 ntBASIC19.36■□□□□ 0.69
COL4A4P53420 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL4A4P53420 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.36■□□□□ 0.69
COL4A4P53420 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.36■□□□□ 0.69
COL4A4P53420 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
COL4A4P53420 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL4A4P53420 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC19.35■□□□□ 0.69
COL4A4P53420 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC19.35■□□□□ 0.69
COL4A4P53420 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL4A4P53420 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL4A4P53420 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
COL4A4P53420 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC19.35■□□□□ 0.69
COL4A4P53420 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL4A4P53420 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC19.35■□□□□ 0.69
COL4A4P53420 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL4A4P53420 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL4A4P53420 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL4A4P53420 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL4A4P53420 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL4A4P53420 BEX3-201ENST00000361298 921 ntTSL 2 BASIC19.35■□□□□ 0.69
COL4A4P53420 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL4A4P53420 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL4A4P53420 AC023274.1-201ENST00000418278 595 ntBASIC19.35■□□□□ 0.69
COL4A4P53420 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL4A4P53420 CYMP-203ENST00000474680 1263 ntBASIC19.35■□□□□ 0.69
COL4A4P53420 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC19.35■□□□□ 0.69
COL4A4P53420 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC19.35■□□□□ 0.69
COL4A4P53420 RNF151-202ENST00000569210 853 ntTSL 2 BASIC19.35■□□□□ 0.69
COL4A4P53420 MTDHP4-201ENST00000600287 670 ntBASIC19.35■□□□□ 0.69
COL4A4P53420 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL4A4P53420 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL4A4P53420 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL4A4P53420 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL4A4P53420 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL4A4P53420 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC19.34■□□□□ 0.69
COL4A4P53420 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.34■□□□□ 0.69
COL4A4P53420 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC19.34■□□□□ 0.69
COL4A4P53420 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL4A4P53420 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.34■□□□□ 0.69
COL4A4P53420 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL4A4P53420 CRCP-205ENST00000431089 942 ntTSL 2 BASIC19.34■□□□□ 0.69
COL4A4P53420 UNC93B6-202ENST00000528242 690 ntBASIC19.34■□□□□ 0.69
COL4A4P53420 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC19.34■□□□□ 0.69
COL4A4P53420 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL4A4P53420 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.34■□□□□ 0.69
COL4A4P53420 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL4A4P53420 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC19.34■□□□□ 0.69
COL4A4P53420 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
COL4A4P53420 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL4A4P53420 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL4A4P53420 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL4A4P53420 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.34■□□□□ 0.69
COL4A4P53420 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL4A4P53420 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
COL4A4P53420 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
COL4A4P53420 CENPM-204ENST00000402420 688 ntTSL 5 BASIC19.33■□□□□ 0.69
COL4A4P53420 AC211486.1-202ENST00000416371 468 ntBASIC19.33■□□□□ 0.69
COL4A4P53420 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC19.33■□□□□ 0.69
COL4A4P53420 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC19.33■□□□□ 0.69
COL4A4P53420 AC211476.1-201ENST00000503899 468 ntBASIC19.33■□□□□ 0.69
COL4A4P53420 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
COL4A4P53420 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC19.33■□□□□ 0.69
COL4A4P53420 RPS15-207ENST00000591032 550 ntTSL 3 BASIC19.33■□□□□ 0.69
COL4A4P53420 AC011467.2-201ENST00000598425 242 ntBASIC19.33■□□□□ 0.69
COL4A4P53420 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
COL4A4P53420 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
COL4A4P53420 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC19.33■□□□□ 0.69
COL4A4P53420 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL4A4P53420 AL356309.3-201ENST00000624132 1934 ntBASIC19.33■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms