Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC14.13□□□□□ -0.15
CXCL1P09341 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
CXCL1P09341 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
CXCL1P09341 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
CXCL1P09341 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CXCL1P09341 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CXCL1P09341 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CXCL1P09341 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CXCL1P09341 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
CXCL1P09341 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC14.13□□□□□ -0.15
CXCL1P09341 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CXCL1P09341 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC14.13□□□□□ -0.15
CXCL1P09341 APTR-203ENST00000430801 583 ntTSL 5 BASIC14.13□□□□□ -0.15
CXCL1P09341 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC14.13□□□□□ -0.15
CXCL1P09341 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
CXCL1P09341 MAX-217ENST00000557277 728 ntTSL 3 BASIC14.13□□□□□ -0.15
CXCL1P09341 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CXCL1P09341 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CXCL1P09341 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CXCL1P09341 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CXCL1P09341 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CXCL1P09341 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CXCL1P09341 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
CXCL1P09341 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC14.13□□□□□ -0.15
CXCL1P09341 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC14.13□□□□□ -0.15
CXCL1P09341 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC14.13□□□□□ -0.15
CXCL1P09341 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC14.13□□□□□ -0.15
CXCL1P09341 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CXCL1P09341 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC14.13□□□□□ -0.15
CXCL1P09341 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CXCL1P09341 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
CXCL1P09341 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CXCL1P09341 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CXCL1P09341 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC14.12□□□□□ -0.15
CXCL1P09341 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CXCL1P09341 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
CXCL1P09341 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CXCL1P09341 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CXCL1P09341 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
CXCL1P09341 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
CXCL1P09341 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC14.12□□□□□ -0.15
CXCL1P09341 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CXCL1P09341 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CXCL1P09341 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
CXCL1P09341 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC14.12□□□□□ -0.15
CXCL1P09341 GPX1P1-201ENST00000388829 606 ntBASIC14.12□□□□□ -0.15
CXCL1P09341 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC14.12□□□□□ -0.15
CXCL1P09341 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CXCL1P09341 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC14.12□□□□□ -0.15
CXCL1P09341 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CXCL1P09341 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC14.12□□□□□ -0.15
CXCL1P09341 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC14.12□□□□□ -0.15
CXCL1P09341 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC14.12□□□□□ -0.15
CXCL1P09341 PARP1-210ENST00000629232 477 ntTSL 5 BASIC14.12□□□□□ -0.15
CXCL1P09341 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
CXCL1P09341 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CXCL1P09341 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
CXCL1P09341 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CXCL1P09341 STK4-201ENST00000372801 2038 ntTSL 2 BASIC14.12□□□□□ -0.15
CXCL1P09341 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
CXCL1P09341 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CXCL1P09341 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CXCL1P09341 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CXCL1P09341 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CXCL1P09341 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CXCL1P09341 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CXCL1P09341 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CXCL1P09341 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CXCL1P09341 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
CXCL1P09341 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC14.11□□□□□ -0.15
CXCL1P09341 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CXCL1P09341 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CXCL1P09341 BANP-204ENST00000393208 2283 ntTSL 2 BASIC14.11□□□□□ -0.15
CXCL1P09341 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CXCL1P09341 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CXCL1P09341 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CXCL1P09341 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CXCL1P09341 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CXCL1P09341 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CXCL1P09341 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CXCL1P09341 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC14.11□□□□□ -0.15
CXCL1P09341 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CXCL1P09341 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CXCL1P09341 AL390719.1-204ENST00000412397 1219 ntBASIC14.11□□□□□ -0.15
CXCL1P09341 KRT8P8-201ENST00000434750 1448 ntBASIC14.11□□□□□ -0.15
CXCL1P09341 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CXCL1P09341 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CXCL1P09341 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC14.11□□□□□ -0.15
CXCL1P09341 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CXCL1P09341 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CXCL1P09341 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC14.11□□□□□ -0.15
CXCL1P09341 AC026691.1-201ENST00000602502 2017 ntBASIC14.11□□□□□ -0.15
CXCL1P09341 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC14.11□□□□□ -0.15
CXCL1P09341 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC14.11□□□□□ -0.15
CXCL1P09341 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
CXCL1P09341 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CXCL1P09341 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC14.11□□□□□ -0.15
CXCL1P09341 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CXCL1P09341 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CXCL1P09341 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms