Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TIMP4Q99727 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TIMP4Q99727 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
TIMP4Q99727 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC16.72■□□□□ 0.27
TIMP4Q99727 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
TIMP4Q99727 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC16.72■□□□□ 0.27
TIMP4Q99727 AC020916.1-201ENST00000587762 1774 ntBASIC16.72■□□□□ 0.27
TIMP4Q99727 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC16.71■□□□□ 0.27
TIMP4Q99727 GATB-213ENST00000515812 1893 ntTSL 5 BASIC16.71■□□□□ 0.27
TIMP4Q99727 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
TIMP4Q99727 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC16.71■□□□□ 0.27
TIMP4Q99727 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TIMP4Q99727 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC16.71■□□□□ 0.27
TIMP4Q99727 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC16.71■□□□□ 0.27
TIMP4Q99727 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC16.71■□□□□ 0.27
TIMP4Q99727 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC16.71■□□□□ 0.27
TIMP4Q99727 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC16.71■□□□□ 0.27
TIMP4Q99727 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TIMP4Q99727 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TIMP4Q99727 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC16.71■□□□□ 0.27
TIMP4Q99727 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC16.71■□□□□ 0.27
TIMP4Q99727 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC16.71■□□□□ 0.27
TIMP4Q99727 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC16.71■□□□□ 0.27
TIMP4Q99727 AC010240.3-201ENST00000607688 395 ntBASIC16.71■□□□□ 0.27
TIMP4Q99727 AC079602.3-201ENST00000623931 403 ntBASIC16.71■□□□□ 0.27
TIMP4Q99727 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC16.71■□□□□ 0.27
TIMP4Q99727 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC16.71■□□□□ 0.27
TIMP4Q99727 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TIMP4Q99727 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TIMP4Q99727 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
TIMP4Q99727 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC16.71■□□□□ 0.27
TIMP4Q99727 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TIMP4Q99727 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TIMP4Q99727 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TIMP4Q99727 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TIMP4Q99727 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.26
TIMP4Q99727 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.26
TIMP4Q99727 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TIMP4Q99727 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TIMP4Q99727 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TIMP4Q99727 ESPNP-201ENST00000270691 2015 ntBASIC16.7■□□□□ 0.26
TIMP4Q99727 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
TIMP4Q99727 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TIMP4Q99727 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC16.7■□□□□ 0.26
TIMP4Q99727 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TIMP4Q99727 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
TIMP4Q99727 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC16.7■□□□□ 0.26
TIMP4Q99727 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TIMP4Q99727 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
TIMP4Q99727 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
TIMP4Q99727 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TIMP4Q99727 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TIMP4Q99727 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TIMP4Q99727 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TIMP4Q99727 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TIMP4Q99727 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC16.7■□□□□ 0.26
TIMP4Q99727 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC16.7■□□□□ 0.26
TIMP4Q99727 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TIMP4Q99727 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TIMP4Q99727 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC16.7■□□□□ 0.26
TIMP4Q99727 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TIMP4Q99727 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC16.7■□□□□ 0.26
TIMP4Q99727 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TIMP4Q99727 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC16.7■□□□□ 0.26
TIMP4Q99727 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
TIMP4Q99727 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC16.7■□□□□ 0.26
TIMP4Q99727 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC16.7■□□□□ 0.26
TIMP4Q99727 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TIMP4Q99727 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TIMP4Q99727 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TIMP4Q99727 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TIMP4Q99727 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.69■□□□□ 0.26
TIMP4Q99727 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TIMP4Q99727 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TIMP4Q99727 AC135776.1-201ENST00000319817 2481 ntBASIC16.69■□□□□ 0.26
TIMP4Q99727 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TIMP4Q99727 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
TIMP4Q99727 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TIMP4Q99727 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC16.69■□□□□ 0.26
TIMP4Q99727 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.69■□□□□ 0.26
TIMP4Q99727 AL357033.4-201ENST00000617703 1807 ntBASIC16.69■□□□□ 0.26
TIMP4Q99727 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC16.69■□□□□ 0.26
TIMP4Q99727 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC16.69■□□□□ 0.26
TIMP4Q99727 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TIMP4Q99727 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TIMP4Q99727 AL645929.1-201ENST00000420084 975 ntBASIC16.69■□□□□ 0.26
TIMP4Q99727 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TIMP4Q99727 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC16.69■□□□□ 0.26
TIMP4Q99727 USF2-205ENST00000594064 1179 ntTSL 2 BASIC16.69■□□□□ 0.26
TIMP4Q99727 NDUFV2-AS1-203ENST00000608008 779 ntBASIC16.69■□□□□ 0.26
TIMP4Q99727 AC093458.2-201ENST00000623150 629 ntBASIC16.69■□□□□ 0.26
TIMP4Q99727 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TIMP4Q99727 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC16.69■□□□□ 0.26
TIMP4Q99727 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC16.69■□□□□ 0.26
TIMP4Q99727 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TIMP4Q99727 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC16.69■□□□□ 0.26
TIMP4Q99727 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TIMP4Q99727 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
TIMP4Q99727 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TIMP4Q99727 AL391807.1-203ENST00000604392 2365 ntBASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms