Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 HES6-206ENST00000409574 738 ntTSL 2 BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 AC011298.3-201ENST00000615796 283 ntBASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 AC006116.8-202ENST00000587620 1550 ntBASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 AC120498.10-201ENST00000621827 505 ntBASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
CLRN3Q8NCR9 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CLRN3Q8NCR9 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
CLRN3Q8NCR9 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
CLRN3Q8NCR9 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC14.52□□□□□ -0.08
CLRN3Q8NCR9 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC14.52□□□□□ -0.08
CLRN3Q8NCR9 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CLRN3Q8NCR9 HLA-DQB1-201ENST00000374943 1656 ntBASIC14.52□□□□□ -0.08
CLRN3Q8NCR9 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
CLRN3Q8NCR9 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CLRN3Q8NCR9 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
CLRN3Q8NCR9 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC14.52□□□□□ -0.08
CLRN3Q8NCR9 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
CLRN3Q8NCR9 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
CLRN3Q8NCR9 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
CLRN3Q8NCR9 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC14.52□□□□□ -0.08
CLRN3Q8NCR9 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
CLRN3Q8NCR9 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
CLRN3Q8NCR9 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC14.52□□□□□ -0.08
CLRN3Q8NCR9 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC14.52□□□□□ -0.08
CLRN3Q8NCR9 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
CLRN3Q8NCR9 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CLRN3Q8NCR9 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
CLRN3Q8NCR9 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CLRN3Q8NCR9 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
CLRN3Q8NCR9 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CLRN3Q8NCR9 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
CLRN3Q8NCR9 PTCHD3P2-201ENST00000424937 1205 ntBASIC14.52□□□□□ -0.09
CLRN3Q8NCR9 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC14.52□□□□□ -0.09
CLRN3Q8NCR9 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CLRN3Q8NCR9 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CLRN3Q8NCR9 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
CLRN3Q8NCR9 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC14.52□□□□□ -0.09
CLRN3Q8NCR9 AC104417.2-201ENST00000562989 1793 ntBASIC14.52□□□□□ -0.09
CLRN3Q8NCR9 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
CLRN3Q8NCR9 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
CLRN3Q8NCR9 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CLRN3Q8NCR9 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CLRN3Q8NCR9 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CLRN3Q8NCR9 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms