Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
VRK3Q8IV63 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VRK3Q8IV63 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.81■□□□□ 0.44
VRK3Q8IV63 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VRK3Q8IV63 AC132938.6-201ENST00000623828 1655 ntBASIC17.8■□□□□ 0.44
VRK3Q8IV63 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.8■□□□□ 0.44
VRK3Q8IV63 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
VRK3Q8IV63 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VRK3Q8IV63 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
VRK3Q8IV63 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VRK3Q8IV63 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
VRK3Q8IV63 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC17.8■□□□□ 0.44
VRK3Q8IV63 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC17.8■□□□□ 0.44
VRK3Q8IV63 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.8■□□□□ 0.44
VRK3Q8IV63 AC010331.1-201ENST00000611423 582 ntBASIC17.8■□□□□ 0.44
VRK3Q8IV63 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
VRK3Q8IV63 AL590326.2-201ENST00000625139 305 ntBASIC17.8■□□□□ 0.44
VRK3Q8IV63 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VRK3Q8IV63 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VRK3Q8IV63 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VRK3Q8IV63 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VRK3Q8IV63 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VRK3Q8IV63 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VRK3Q8IV63 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.8■□□□□ 0.44
VRK3Q8IV63 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VRK3Q8IV63 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
VRK3Q8IV63 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
VRK3Q8IV63 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VRK3Q8IV63 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.8■□□□□ 0.44
VRK3Q8IV63 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
VRK3Q8IV63 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VRK3Q8IV63 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VRK3Q8IV63 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
VRK3Q8IV63 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VRK3Q8IV63 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VRK3Q8IV63 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VRK3Q8IV63 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
VRK3Q8IV63 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.79■□□□□ 0.44
VRK3Q8IV63 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VRK3Q8IV63 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.79■□□□□ 0.44
VRK3Q8IV63 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
VRK3Q8IV63 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.79■□□□□ 0.44
VRK3Q8IV63 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VRK3Q8IV63 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.79■□□□□ 0.44
VRK3Q8IV63 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VRK3Q8IV63 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VRK3Q8IV63 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VRK3Q8IV63 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VRK3Q8IV63 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VRK3Q8IV63 MIR1224-201ENST00000408193 85 ntBASIC17.79■□□□□ 0.44
VRK3Q8IV63 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
VRK3Q8IV63 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.79■□□□□ 0.44
VRK3Q8IV63 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.79■□□□□ 0.44
VRK3Q8IV63 KRT18P35-201ENST00000510488 1269 ntBASIC17.79■□□□□ 0.44
VRK3Q8IV63 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.79■□□□□ 0.44
VRK3Q8IV63 RNF126P1-202ENST00000569893 925 ntBASIC17.79■□□□□ 0.44
VRK3Q8IV63 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
VRK3Q8IV63 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
VRK3Q8IV63 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VRK3Q8IV63 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VRK3Q8IV63 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VRK3Q8IV63 LINC00167-201ENST00000530583 1419 ntBASIC17.79■□□□□ 0.44
VRK3Q8IV63 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VRK3Q8IV63 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VRK3Q8IV63 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.79■□□□□ 0.44
VRK3Q8IV63 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.79■□□□□ 0.44
VRK3Q8IV63 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.79■□□□□ 0.44
VRK3Q8IV63 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.79■□□□□ 0.44
VRK3Q8IV63 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VRK3Q8IV63 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.78■□□□□ 0.44
VRK3Q8IV63 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VRK3Q8IV63 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VRK3Q8IV63 LINC00602-201ENST00000629776 2065 ntBASIC17.78■□□□□ 0.44
VRK3Q8IV63 NOC2LP1-202ENST00000452600 2235 ntBASIC17.78■□□□□ 0.44
VRK3Q8IV63 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.78■□□□□ 0.44
VRK3Q8IV63 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
VRK3Q8IV63 KRT18P48-201ENST00000434763 852 ntBASIC17.78■□□□□ 0.44
VRK3Q8IV63 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.78■□□□□ 0.44
VRK3Q8IV63 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VRK3Q8IV63 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC17.78■□□□□ 0.44
VRK3Q8IV63 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.78■□□□□ 0.44
VRK3Q8IV63 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC17.78■□□□□ 0.44
VRK3Q8IV63 CLN6-204ENST00000564752 900 ntTSL 3 BASIC17.78■□□□□ 0.44
VRK3Q8IV63 AL445228.2-201ENST00000605589 952 ntBASIC17.78■□□□□ 0.44
VRK3Q8IV63 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.78■□□□□ 0.44
VRK3Q8IV63 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.78■□□□□ 0.44
VRK3Q8IV63 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
VRK3Q8IV63 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VRK3Q8IV63 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
VRK3Q8IV63 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
VRK3Q8IV63 AP000997.3-201ENST00000623333 2250 ntBASIC17.78■□□□□ 0.44
VRK3Q8IV63 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC17.78■□□□□ 0.44
VRK3Q8IV63 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.78■□□□□ 0.44
VRK3Q8IV63 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
VRK3Q8IV63 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.78■□□□□ 0.44
VRK3Q8IV63 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VRK3Q8IV63 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.77■□□□□ 0.44
VRK3Q8IV63 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VRK3Q8IV63 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.77■□□□□ 0.44
VRK3Q8IV63 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms