Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC11.38□□□□□ -0.59
LINC00643Q86TS7 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 AL138688.1-201ENST00000624851 1594 ntBASIC11.37□□□□□ -0.59
LINC00643Q86TS7 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 AC092384.3-202ENST00000564646 2873 ntBASIC11.37□□□□□ -0.59
LINC00643Q86TS7 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 GTSE1-AS1-202ENST00000623117 1518 ntBASIC11.37□□□□□ -0.59
LINC00643Q86TS7 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 FXN-202ENST00000396364 980 ntTSL 5 BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 SPCS2P3-201ENST00000500401 656 ntBASIC11.37□□□□□ -0.59
LINC00643Q86TS7 AC019171.1-201ENST00000601251 1056 ntBASIC11.37□□□□□ -0.59
LINC00643Q86TS7 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC11.37□□□□□ -0.59
LINC00643Q86TS7 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 GRAMD4P7-201ENST00000578182 1232 ntBASIC11.36□□□□□ -0.59
LINC00643Q86TS7 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC11.36□□□□□ -0.59
LINC00643Q86TS7 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms