Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 AC142381.4-202ENST00000563973 229 ntBASIC13.98□□□□□ -0.17
HIST1H1AQ02539 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC13.98□□□□□ -0.17
HIST1H1AQ02539 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC13.98□□□□□ -0.17
HIST1H1AQ02539 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
HIST1H1AQ02539 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HIST1H1AQ02539 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC13.98□□□□□ -0.17
HIST1H1AQ02539 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
HIST1H1AQ02539 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HIST1H1AQ02539 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HIST1H1AQ02539 FSCN1P1-201ENST00000568912 1481 ntBASIC13.98□□□□□ -0.17
HIST1H1AQ02539 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
HIST1H1AQ02539 CEP83-AS1-201ENST00000623122 2482 ntBASIC13.98□□□□□ -0.17
HIST1H1AQ02539 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC13.98□□□□□ -0.17
HIST1H1AQ02539 AL499627.1-201ENST00000569373 2188 ntBASIC13.98□□□□□ -0.17
HIST1H1AQ02539 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 GATB-213ENST00000515812 1893 ntTSL 5 BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 SAPCD2P4-201ENST00000424595 1171 ntBASIC13.97□□□□□ -0.17
HIST1H1AQ02539 AL158047.1-201ENST00000445918 881 ntBASIC13.97□□□□□ -0.17
HIST1H1AQ02539 AC008040.2-201ENST00000461049 708 ntBASIC13.97□□□□□ -0.17
HIST1H1AQ02539 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 CD177P1-201ENST00000606252 935 ntBASIC13.97□□□□□ -0.17
HIST1H1AQ02539 AC130371.2-201ENST00000619443 611 ntBASIC13.97□□□□□ -0.17
HIST1H1AQ02539 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
HIST1H1AQ02539 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC13.96□□□□□ -0.17
HIST1H1AQ02539 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC13.96□□□□□ -0.17
HIST1H1AQ02539 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HIST1H1AQ02539 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HIST1H1AQ02539 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC13.96□□□□□ -0.17
HIST1H1AQ02539 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
HIST1H1AQ02539 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HIST1H1AQ02539 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
HIST1H1AQ02539 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HIST1H1AQ02539 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
HIST1H1AQ02539 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HIST1H1AQ02539 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HIST1H1AQ02539 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC13.96□□□□□ -0.17
HIST1H1AQ02539 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC13.96□□□□□ -0.17
HIST1H1AQ02539 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC13.96□□□□□ -0.17
HIST1H1AQ02539 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC13.96□□□□□ -0.17
HIST1H1AQ02539 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC13.96□□□□□ -0.17
HIST1H1AQ02539 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC13.96□□□□□ -0.17
HIST1H1AQ02539 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HIST1H1AQ02539 AL357033.4-201ENST00000617703 1807 ntBASIC13.96□□□□□ -0.17
HIST1H1AQ02539 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC13.96□□□□□ -0.17
HIST1H1AQ02539 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
HIST1H1AQ02539 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.18
HIST1H1AQ02539 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
HIST1H1AQ02539 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
HIST1H1AQ02539 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
HIST1H1AQ02539 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
HIST1H1AQ02539 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.18
HIST1H1AQ02539 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC13.96□□□□□ -0.18
HIST1H1AQ02539 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
HIST1H1AQ02539 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
HIST1H1AQ02539 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.18
HIST1H1AQ02539 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
HIST1H1AQ02539 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
HIST1H1AQ02539 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HIST1H1AQ02539 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
HIST1H1AQ02539 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
HIST1H1AQ02539 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
HIST1H1AQ02539 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HIST1H1AQ02539 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HIST1H1AQ02539 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HIST1H1AQ02539 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
HIST1H1AQ02539 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms