Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTPN4P29074 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTPN4P29074 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTPN4P29074 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTPN4P29074 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
PTPN4P29074 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTPN4P29074 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTPN4P29074 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTPN4P29074 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PTPN4P29074 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.31■□□□□ 0.52
PTPN4P29074 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTPN4P29074 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTPN4P29074 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.31■□□□□ 0.52
PTPN4P29074 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PTPN4P29074 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
PTPN4P29074 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
PTPN4P29074 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC18.31■□□□□ 0.52
PTPN4P29074 LIN28AP1-201ENST00000429574 405 ntBASIC18.31■□□□□ 0.52
PTPN4P29074 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.31■□□□□ 0.52
PTPN4P29074 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC18.31■□□□□ 0.52
PTPN4P29074 RMI2-205ENST00000576027 818 ntTSL 2 BASIC18.31■□□□□ 0.52
PTPN4P29074 AP000692.2-201ENST00000608391 879 ntBASIC18.31■□□□□ 0.52
PTPN4P29074 HLA-A-209ENST00000638375 975 ntBASIC18.31■□□□□ 0.52
PTPN4P29074 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC18.31■□□□□ 0.52
PTPN4P29074 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTPN4P29074 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
PTPN4P29074 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTPN4P29074 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.31■□□□□ 0.52
PTPN4P29074 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.31■□□□□ 0.52
PTPN4P29074 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTPN4P29074 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTPN4P29074 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTPN4P29074 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.31■□□□□ 0.52
PTPN4P29074 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PTPN4P29074 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTPN4P29074 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PTPN4P29074 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTPN4P29074 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PTPN4P29074 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTPN4P29074 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PTPN4P29074 RCC2P6-201ENST00000526625 1557 ntBASIC18.3■□□□□ 0.52
PTPN4P29074 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTPN4P29074 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
PTPN4P29074 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC18.3■□□□□ 0.52
PTPN4P29074 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
PTPN4P29074 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
PTPN4P29074 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTPN4P29074 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
PTPN4P29074 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.3■□□□□ 0.52
PTPN4P29074 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PTPN4P29074 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTPN4P29074 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.3■□□□□ 0.52
PTPN4P29074 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
PTPN4P29074 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.3■□□□□ 0.52
PTPN4P29074 AC128688.1-201ENST00000487626 519 ntBASIC18.3■□□□□ 0.52
PTPN4P29074 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.3■□□□□ 0.52
PTPN4P29074 SLC25A1P4-201ENST00000567977 778 ntBASIC18.3■□□□□ 0.52
PTPN4P29074 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTPN4P29074 AC011298.2-201ENST00000617989 482 ntBASIC18.3■□□□□ 0.52
PTPN4P29074 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTPN4P29074 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTPN4P29074 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
PTPN4P29074 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PTPN4P29074 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
PTPN4P29074 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
PTPN4P29074 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC18.3■□□□□ 0.52
PTPN4P29074 AC138028.4-201ENST00000564984 1845 ntBASIC18.3■□□□□ 0.52
PTPN4P29074 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PTPN4P29074 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PTPN4P29074 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.3■□□□□ 0.52
PTPN4P29074 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PTPN4P29074 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PTPN4P29074 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTPN4P29074 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
PTPN4P29074 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
PTPN4P29074 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
PTPN4P29074 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
PTPN4P29074 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.29■□□□□ 0.52
PTPN4P29074 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PTPN4P29074 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTPN4P29074 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTPN4P29074 PRR31-201ENST00000371629 978 ntTSL 2 BASIC18.29■□□□□ 0.52
PTPN4P29074 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
PTPN4P29074 AC004951.3-201ENST00000418645 1148 ntBASIC18.29■□□□□ 0.52
PTPN4P29074 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.29■□□□□ 0.52
PTPN4P29074 ATP5G1P1-201ENST00000448724 379 ntBASIC18.29■□□□□ 0.52
PTPN4P29074 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.29■□□□□ 0.52
PTPN4P29074 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC18.29■□□□□ 0.52
PTPN4P29074 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.29■□□□□ 0.52
PTPN4P29074 CYGB-204ENST00000589342 815 ntTSL 3 BASIC18.29■□□□□ 0.52
PTPN4P29074 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTPN4P29074 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC18.29■□□□□ 0.52
PTPN4P29074 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
PTPN4P29074 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PTPN4P29074 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTPN4P29074 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.29■□□□□ 0.52
PTPN4P29074 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTPN4P29074 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
PTPN4P29074 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.29■□□□□ 0.52
PTPN4P29074 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms