Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A1P20908 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL5A1P20908 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL5A1P20908 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.41■□□□□ 0.38
COL5A1P20908 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL5A1P20908 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.41■□□□□ 0.38
COL5A1P20908 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.41■□□□□ 0.38
COL5A1P20908 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL5A1P20908 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL5A1P20908 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL5A1P20908 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL5A1P20908 LAGE3P1-201ENST00000425356 484 ntBASIC17.41■□□□□ 0.38
COL5A1P20908 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC17.41■□□□□ 0.38
COL5A1P20908 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.41■□□□□ 0.38
COL5A1P20908 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.41■□□□□ 0.38
COL5A1P20908 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC17.41■□□□□ 0.38
COL5A1P20908 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
COL5A1P20908 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL5A1P20908 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL5A1P20908 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL5A1P20908 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
COL5A1P20908 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL5A1P20908 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL5A1P20908 AC079776.2-201ENST00000641154 1609 ntBASIC17.4■□□□□ 0.38
COL5A1P20908 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL5A1P20908 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL5A1P20908 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.4■□□□□ 0.38
COL5A1P20908 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL5A1P20908 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.4■□□□□ 0.38
COL5A1P20908 GGCT-205ENST00000409436 954 ntTSL 3 BASIC17.4■□□□□ 0.38
COL5A1P20908 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC17.4■□□□□ 0.38
COL5A1P20908 KRT18P3-201ENST00000451602 1288 ntBASIC17.4■□□□□ 0.38
COL5A1P20908 AC112698.1-201ENST00000510299 916 ntBASIC17.4■□□□□ 0.38
COL5A1P20908 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC17.4■□□□□ 0.38
COL5A1P20908 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC17.4■□□□□ 0.38
COL5A1P20908 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC17.4■□□□□ 0.38
COL5A1P20908 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.4■□□□□ 0.38
COL5A1P20908 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL5A1P20908 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC17.4■□□□□ 0.38
COL5A1P20908 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL5A1P20908 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL5A1P20908 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC17.4■□□□□ 0.38
COL5A1P20908 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL5A1P20908 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL5A1P20908 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
COL5A1P20908 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.4■□□□□ 0.38
COL5A1P20908 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
COL5A1P20908 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC17.4■□□□□ 0.38
COL5A1P20908 AC007967.2-201ENST00000432613 625 ntBASIC17.4■□□□□ 0.38
COL5A1P20908 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL5A1P20908 RNA5SP416-201ENST00000516838 111 ntBASIC17.4■□□□□ 0.38
COL5A1P20908 AC002347.1-201ENST00000569543 541 ntBASIC17.4■□□□□ 0.38
COL5A1P20908 LINC02084-201ENST00000606069 1096 ntBASIC17.4■□□□□ 0.38
COL5A1P20908 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC17.4■□□□□ 0.38
COL5A1P20908 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC17.4■□□□□ 0.38
COL5A1P20908 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC17.4■□□□□ 0.38
COL5A1P20908 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
COL5A1P20908 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC17.39■□□□□ 0.38
COL5A1P20908 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.38
COL5A1P20908 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
COL5A1P20908 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL5A1P20908 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC17.39■□□□□ 0.37
COL5A1P20908 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
COL5A1P20908 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
COL5A1P20908 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL5A1P20908 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL5A1P20908 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL5A1P20908 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL5A1P20908 FUOM-202ENST00000368551 628 ntTSL 3 BASIC17.39■□□□□ 0.37
COL5A1P20908 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL5A1P20908 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL5A1P20908 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
COL5A1P20908 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
COL5A1P20908 AL139424.1-201ENST00000607572 797 ntBASIC17.39■□□□□ 0.37
COL5A1P20908 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC17.39■□□□□ 0.37
COL5A1P20908 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.39■□□□□ 0.37
COL5A1P20908 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC17.39■□□□□ 0.37
COL5A1P20908 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL5A1P20908 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL5A1P20908 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.38■□□□□ 0.37
COL5A1P20908 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL5A1P20908 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL5A1P20908 PMP22-202ENST00000395936 816 ntTSL 3 BASIC17.38■□□□□ 0.37
COL5A1P20908 KRT18P27-201ENST00000427733 1299 ntBASIC17.38■□□□□ 0.37
COL5A1P20908 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC17.38■□□□□ 0.37
COL5A1P20908 AC105339.3-201ENST00000560043 636 ntBASIC17.38■□□□□ 0.37
COL5A1P20908 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC17.38■□□□□ 0.37
COL5A1P20908 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
COL5A1P20908 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
COL5A1P20908 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL5A1P20908 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL5A1P20908 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
COL5A1P20908 CROCCP3-202ENST00000420820 1947 ntBASIC17.38■□□□□ 0.37
COL5A1P20908 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL5A1P20908 AC004967.1-201ENST00000453589 447 ntBASIC17.37■□□□□ 0.37
COL5A1P20908 UNC93B6-202ENST00000528242 690 ntBASIC17.37■□□□□ 0.37
COL5A1P20908 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.37■□□□□ 0.37
COL5A1P20908 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
COL5A1P20908 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL5A1P20908 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms