Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSH3P20585 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
MSH3P20585 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.15■□□□□ 0.5
MSH3P20585 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSH3P20585 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
MSH3P20585 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
MSH3P20585 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
MSH3P20585 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSH3P20585 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
MSH3P20585 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
MSH3P20585 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSH3P20585 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC18.15■□□□□ 0.5
MSH3P20585 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.15■□□□□ 0.5
MSH3P20585 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.14■□□□□ 0.5
MSH3P20585 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.5
MSH3P20585 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
MSH3P20585 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.5
MSH3P20585 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
MSH3P20585 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSH3P20585 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
MSH3P20585 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSH3P20585 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSH3P20585 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSH3P20585 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSH3P20585 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
MSH3P20585 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
MSH3P20585 GUK1-204ENST00000366721 689 ntTSL 3 BASIC18.14■□□□□ 0.49
MSH3P20585 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC18.14■□□□□ 0.49
MSH3P20585 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC18.14■□□□□ 0.49
MSH3P20585 AL671277.2-201ENST00000458060 996 ntBASIC18.14■□□□□ 0.49
MSH3P20585 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC18.14■□□□□ 0.49
MSH3P20585 AC010331.1-201ENST00000611423 582 ntBASIC18.14■□□□□ 0.49
MSH3P20585 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
MSH3P20585 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC18.14■□□□□ 0.49
MSH3P20585 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.14■□□□□ 0.49
MSH3P20585 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSH3P20585 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.14■□□□□ 0.49
MSH3P20585 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
MSH3P20585 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
MSH3P20585 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC18.14■□□□□ 0.49
MSH3P20585 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
MSH3P20585 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSH3P20585 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSH3P20585 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
MSH3P20585 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.14■□□□□ 0.49
MSH3P20585 LINC01311-201ENST00000565162 1445 ntBASIC18.14■□□□□ 0.49
MSH3P20585 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
MSH3P20585 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.14■□□□□ 0.49
MSH3P20585 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSH3P20585 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MSH3P20585 AL391807.1-203ENST00000604392 2365 ntBASIC18.13■□□□□ 0.49
MSH3P20585 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
MSH3P20585 GMCL1P1-201ENST00000463439 1581 ntBASIC18.13■□□□□ 0.49
MSH3P20585 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.13■□□□□ 0.49
MSH3P20585 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
MSH3P20585 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.13■□□□□ 0.49
MSH3P20585 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC18.13■□□□□ 0.49
MSH3P20585 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.13■□□□□ 0.49
MSH3P20585 AC092597.1-201ENST00000487352 616 ntBASIC18.13■□□□□ 0.49
MSH3P20585 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
MSH3P20585 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC18.13■□□□□ 0.49
MSH3P20585 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC18.13■□□□□ 0.49
MSH3P20585 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
MSH3P20585 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
MSH3P20585 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC18.13■□□□□ 0.49
MSH3P20585 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC18.13■□□□□ 0.49
MSH3P20585 AC079602.3-201ENST00000623931 403 ntBASIC18.13■□□□□ 0.49
MSH3P20585 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
MSH3P20585 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
MSH3P20585 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MSH3P20585 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
MSH3P20585 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.13■□□□□ 0.49
MSH3P20585 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.13■□□□□ 0.49
MSH3P20585 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
MSH3P20585 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MSH3P20585 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
MSH3P20585 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
MSH3P20585 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
MSH3P20585 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.12■□□□□ 0.49
MSH3P20585 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSH3P20585 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSH3P20585 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
MSH3P20585 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
MSH3P20585 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.12■□□□□ 0.49
MSH3P20585 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.12■□□□□ 0.49
MSH3P20585 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.12■□□□□ 0.49
MSH3P20585 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSH3P20585 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MSH3P20585 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC18.12■□□□□ 0.49
MSH3P20585 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
MSH3P20585 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
MSH3P20585 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
MSH3P20585 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC18.12■□□□□ 0.49
MSH3P20585 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
MSH3P20585 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
MSH3P20585 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC18.12■□□□□ 0.49
MSH3P20585 AC087388.1-201ENST00000571370 1112 ntBASIC18.12■□□□□ 0.49
MSH3P20585 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC18.12■□□□□ 0.49
MSH3P20585 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC18.12■□□□□ 0.49
MSH3P20585 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms