Protein–RNA interactions for Protein: P16234

PDGFRA, Platelet-derived growth factor receptor alpha, humanhuman

Predictions only

Length 1,089 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRAP16234 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PDGFRAP16234 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19.14■□□□□ 0.65
PDGFRAP16234 MED25-212ENST00000618715 1467 ntTSL 5 BASIC19.14■□□□□ 0.65
PDGFRAP16234 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
PDGFRAP16234 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC19.14■□□□□ 0.65
PDGFRAP16234 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PDGFRAP16234 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PDGFRAP16234 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC19.14■□□□□ 0.65
PDGFRAP16234 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
PDGFRAP16234 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PDGFRAP16234 REXO1L9P-201ENST00000604264 2108 ntBASIC19.13■□□□□ 0.65
PDGFRAP16234 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
PDGFRAP16234 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PDGFRAP16234 HTR7P1-202ENST00000624664 4411 ntBASIC19.13■□□□□ 0.65
PDGFRAP16234 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PDGFRAP16234 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PDGFRAP16234 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PDGFRAP16234 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PDGFRAP16234 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PDGFRAP16234 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC19.13■□□□□ 0.65
PDGFRAP16234 PVRIG2P-201ENST00000435460 978 ntBASIC19.13■□□□□ 0.65
PDGFRAP16234 KRT18P38-201ENST00000449496 1282 ntBASIC19.13■□□□□ 0.65
PDGFRAP16234 HOMER2P1-201ENST00000455653 964 ntBASIC19.13■□□□□ 0.65
PDGFRAP16234 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC19.13■□□□□ 0.65
PDGFRAP16234 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC19.13■□□□□ 0.65
PDGFRAP16234 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC19.13■□□□□ 0.65
PDGFRAP16234 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PDGFRAP16234 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PDGFRAP16234 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
PDGFRAP16234 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PDGFRAP16234 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
PDGFRAP16234 AL096828.2-201ENST00000567259 1965 ntBASIC19.13■□□□□ 0.65
PDGFRAP16234 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
PDGFRAP16234 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
PDGFRAP16234 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PDGFRAP16234 CD276-201ENST00000318424 2738 ntTSL 5 BASIC19.13■□□□□ 0.65
PDGFRAP16234 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
PDGFRAP16234 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.13■□□□□ 0.65
PDGFRAP16234 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PDGFRAP16234 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PDGFRAP16234 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PDGFRAP16234 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PDGFRAP16234 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PDGFRAP16234 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
PDGFRAP16234 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19.12■□□□□ 0.65
PDGFRAP16234 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PDGFRAP16234 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PDGFRAP16234 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PDGFRAP16234 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC19.12■□□□□ 0.65
PDGFRAP16234 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PDGFRAP16234 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
PDGFRAP16234 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC19.12■□□□□ 0.65
PDGFRAP16234 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PDGFRAP16234 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PDGFRAP16234 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
PDGFRAP16234 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PDGFRAP16234 SAPCD2P2-201ENST00000431719 1174 ntBASIC19.12■□□□□ 0.65
PDGFRAP16234 SNX5-210ENST00000481323 562 ntTSL 3 BASIC19.12■□□□□ 0.65
PDGFRAP16234 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PDGFRAP16234 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
PDGFRAP16234 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19.12■□□□□ 0.65
PDGFRAP16234 USF2-205ENST00000594064 1179 ntTSL 2 BASIC19.12■□□□□ 0.65
PDGFRAP16234 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC19.12■□□□□ 0.65
PDGFRAP16234 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC19.12■□□□□ 0.65
PDGFRAP16234 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
PDGFRAP16234 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
PDGFRAP16234 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PDGFRAP16234 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC19.12■□□□□ 0.65
PDGFRAP16234 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PDGFRAP16234 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PDGFRAP16234 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PDGFRAP16234 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC19.11■□□□□ 0.65
PDGFRAP16234 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
PDGFRAP16234 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PDGFRAP16234 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PDGFRAP16234 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PDGFRAP16234 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
PDGFRAP16234 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PDGFRAP16234 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
PDGFRAP16234 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
PDGFRAP16234 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
PDGFRAP16234 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
PDGFRAP16234 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PDGFRAP16234 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PDGFRAP16234 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PDGFRAP16234 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
PDGFRAP16234 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PDGFRAP16234 STARP1-201ENST00000397973 869 ntBASIC19.11■□□□□ 0.65
PDGFRAP16234 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC19.11■□□□□ 0.65
PDGFRAP16234 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PDGFRAP16234 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC19.11■□□□□ 0.65
PDGFRAP16234 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC19.11■□□□□ 0.65
PDGFRAP16234 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC19.11■□□□□ 0.65
PDGFRAP16234 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
PDGFRAP16234 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PDGFRAP16234 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
PDGFRAP16234 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC19.11■□□□□ 0.65
PDGFRAP16234 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
PDGFRAP16234 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
PDGFRAP16234 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms