Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
CTDNEP1O95476 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CTDNEP1O95476 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC21.1■□□□□ 0.97
CTDNEP1O95476 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTDNEP1O95476 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC21.1■□□□□ 0.97
CTDNEP1O95476 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTDNEP1O95476 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTDNEP1O95476 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTDNEP1O95476 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
CTDNEP1O95476 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTDNEP1O95476 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
CTDNEP1O95476 ANKRD20A18P-201ENST00000359341 492 ntBASIC21.1■□□□□ 0.97
CTDNEP1O95476 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CTDNEP1O95476 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC21.1■□□□□ 0.97
CTDNEP1O95476 AC092597.1-201ENST00000487352 616 ntBASIC21.1■□□□□ 0.97
CTDNEP1O95476 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC21.1■□□□□ 0.97
CTDNEP1O95476 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC21.1■□□□□ 0.97
CTDNEP1O95476 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC21.1■□□□□ 0.97
CTDNEP1O95476 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
CTDNEP1O95476 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
CTDNEP1O95476 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTDNEP1O95476 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTDNEP1O95476 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CTDNEP1O95476 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC21.1■□□□□ 0.97
CTDNEP1O95476 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
CTDNEP1O95476 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
CTDNEP1O95476 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTDNEP1O95476 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTDNEP1O95476 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTDNEP1O95476 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTDNEP1O95476 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTDNEP1O95476 KRT18P55-202ENST00000578578 1546 ntBASIC21.09■□□□□ 0.97
CTDNEP1O95476 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CTDNEP1O95476 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CTDNEP1O95476 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
CTDNEP1O95476 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
CTDNEP1O95476 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CTDNEP1O95476 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CTDNEP1O95476 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CTDNEP1O95476 SNX5-210ENST00000481323 562 ntTSL 3 BASIC21.09■□□□□ 0.97
CTDNEP1O95476 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC21.09■□□□□ 0.97
CTDNEP1O95476 DUTP2-201ENST00000519164 463 ntBASIC21.09■□□□□ 0.97
CTDNEP1O95476 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
CTDNEP1O95476 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC21.09■□□□□ 0.97
CTDNEP1O95476 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC21.09■□□□□ 0.97
CTDNEP1O95476 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC21.09■□□□□ 0.97
CTDNEP1O95476 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
CTDNEP1O95476 LINC00896-202ENST00000609602 2128 ntBASIC21.09■□□□□ 0.97
CTDNEP1O95476 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC21.09■□□□□ 0.97
CTDNEP1O95476 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CTDNEP1O95476 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CTDNEP1O95476 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CTDNEP1O95476 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CTDNEP1O95476 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC21.09■□□□□ 0.97
CTDNEP1O95476 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CTDNEP1O95476 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CTDNEP1O95476 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CTDNEP1O95476 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CTDNEP1O95476 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC21.09■□□□□ 0.97
CTDNEP1O95476 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CTDNEP1O95476 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CTDNEP1O95476 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CTDNEP1O95476 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CTDNEP1O95476 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CTDNEP1O95476 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
CTDNEP1O95476 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC21.08■□□□□ 0.97
CTDNEP1O95476 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CTDNEP1O95476 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CTDNEP1O95476 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC21.08■□□□□ 0.97
CTDNEP1O95476 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CTDNEP1O95476 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CTDNEP1O95476 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CTDNEP1O95476 STARP1-201ENST00000397973 869 ntBASIC21.08■□□□□ 0.97
CTDNEP1O95476 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
CTDNEP1O95476 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CTDNEP1O95476 HLA-F-220ENST00000434407 884 ntBASIC21.08■□□□□ 0.97
CTDNEP1O95476 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC21.08■□□□□ 0.97
CTDNEP1O95476 AC104076.2-201ENST00000448912 469 ntBASIC21.08■□□□□ 0.97
CTDNEP1O95476 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC21.08■□□□□ 0.97
CTDNEP1O95476 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CTDNEP1O95476 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC21.08■□□□□ 0.97
CTDNEP1O95476 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CTDNEP1O95476 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC21.08■□□□□ 0.96
CTDNEP1O95476 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC21.08■□□□□ 0.96
CTDNEP1O95476 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CTDNEP1O95476 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CTDNEP1O95476 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
CTDNEP1O95476 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CTDNEP1O95476 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CTDNEP1O95476 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CTDNEP1O95476 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CTDNEP1O95476 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CTDNEP1O95476 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CTDNEP1O95476 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
CTDNEP1O95476 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC21.08■□□□□ 0.96
CTDNEP1O95476 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC21.07■□□□□ 0.96
CTDNEP1O95476 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC21.07■□□□□ 0.96
CTDNEP1O95476 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC21.07■□□□□ 0.96
CTDNEP1O95476 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTDNEP1O95476 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms