Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
HMGN4O00479 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGN4O00479 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
HMGN4O00479 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
HMGN4O00479 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HMGN4O00479 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGN4O00479 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGN4O00479 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
HMGN4O00479 CRAT-202ENST00000393384 973 ntTSL 2 BASIC16.97■□□□□ 0.31
HMGN4O00479 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HMGN4O00479 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC16.97■□□□□ 0.31
HMGN4O00479 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HMGN4O00479 ECEL1P2-202ENST00000465689 757 ntBASIC16.97■□□□□ 0.31
HMGN4O00479 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC16.97■□□□□ 0.31
HMGN4O00479 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC16.97■□□□□ 0.31
HMGN4O00479 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC16.97■□□□□ 0.31
HMGN4O00479 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC16.97■□□□□ 0.31
HMGN4O00479 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC16.97■□□□□ 0.31
HMGN4O00479 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC16.97■□□□□ 0.31
HMGN4O00479 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HMGN4O00479 AC024243.1-201ENST00000609234 778 ntBASIC16.97■□□□□ 0.31
HMGN4O00479 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGN4O00479 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGN4O00479 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC16.97■□□□□ 0.31
HMGN4O00479 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGN4O00479 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGN4O00479 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGN4O00479 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC16.97■□□□□ 0.31
HMGN4O00479 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HMGN4O00479 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16.97■□□□□ 0.31
HMGN4O00479 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HMGN4O00479 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC16.97■□□□□ 0.31
HMGN4O00479 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGN4O00479 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGN4O00479 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC16.96■□□□□ 0.31
HMGN4O00479 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGN4O00479 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGN4O00479 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC16.96■□□□□ 0.31
HMGN4O00479 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC16.96■□□□□ 0.31
HMGN4O00479 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
HMGN4O00479 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC16.96■□□□□ 0.31
HMGN4O00479 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGN4O00479 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGN4O00479 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGN4O00479 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGN4O00479 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.31
HMGN4O00479 KIRREL3-AS3-201ENST00000404882 831 ntBASIC16.96■□□□□ 0.31
HMGN4O00479 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGN4O00479 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC16.96■□□□□ 0.31
HMGN4O00479 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGN4O00479 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC16.96■□□□□ 0.31
HMGN4O00479 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGN4O00479 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
HMGN4O00479 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGN4O00479 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC16.96■□□□□ 0.3
HMGN4O00479 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC16.96■□□□□ 0.3
HMGN4O00479 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
HMGN4O00479 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
HMGN4O00479 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
HMGN4O00479 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.3
HMGN4O00479 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
HMGN4O00479 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC16.96■□□□□ 0.3
HMGN4O00479 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
HMGN4O00479 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGN4O00479 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
HMGN4O00479 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC16.95■□□□□ 0.3
HMGN4O00479 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC16.95■□□□□ 0.3
HMGN4O00479 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC16.95■□□□□ 0.3
HMGN4O00479 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGN4O00479 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC16.95■□□□□ 0.3
HMGN4O00479 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGN4O00479 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
HMGN4O00479 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
HMGN4O00479 HMGA1P5-201ENST00000412453 271 ntBASIC16.95■□□□□ 0.3
HMGN4O00479 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC16.95■□□□□ 0.3
HMGN4O00479 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HMGN4O00479 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC16.95■□□□□ 0.3
HMGN4O00479 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC16.95■□□□□ 0.3
HMGN4O00479 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC16.95■□□□□ 0.3
HMGN4O00479 AL512604.3-201ENST00000569583 964 ntBASIC16.95■□□□□ 0.3
HMGN4O00479 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGN4O00479 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGN4O00479 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGN4O00479 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HMGN4O00479 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
HMGN4O00479 AC012317.2-201ENST00000623305 2251 ntBASIC16.95■□□□□ 0.3
HMGN4O00479 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HMGN4O00479 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGN4O00479 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
HMGN4O00479 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC16.95■□□□□ 0.3
HMGN4O00479 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGN4O00479 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGN4O00479 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
HMGN4O00479 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGN4O00479 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HMGN4O00479 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC16.94■□□□□ 0.3
HMGN4O00479 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGN4O00479 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGN4O00479 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
HMGN4O00479 GAD2-202ENST00000376248 680 ntTSL 5 BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 61.8 ms