Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CISHQ9NSE2 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CISHQ9NSE2 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.45■□□□□ 0.7
CISHQ9NSE2 KRT89P-201ENST00000620027 1478 ntBASIC19.45■□□□□ 0.7
CISHQ9NSE2 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC19.45■□□□□ 0.7
CISHQ9NSE2 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CISHQ9NSE2 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CISHQ9NSE2 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CISHQ9NSE2 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CISHQ9NSE2 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CISHQ9NSE2 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CISHQ9NSE2 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CISHQ9NSE2 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CISHQ9NSE2 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CISHQ9NSE2 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CISHQ9NSE2 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.44■□□□□ 0.7
CISHQ9NSE2 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CISHQ9NSE2 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC19.44■□□□□ 0.7
CISHQ9NSE2 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CISHQ9NSE2 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CISHQ9NSE2 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CISHQ9NSE2 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC19.44■□□□□ 0.7
CISHQ9NSE2 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC19.44■□□□□ 0.7
CISHQ9NSE2 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CISHQ9NSE2 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CISHQ9NSE2 HES2-202ENST00000377836 507 ntTSL 2 BASIC19.44■□□□□ 0.7
CISHQ9NSE2 KIRREL3-AS3-201ENST00000404882 831 ntBASIC19.44■□□□□ 0.7
CISHQ9NSE2 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CISHQ9NSE2 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
CISHQ9NSE2 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CISHQ9NSE2 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CISHQ9NSE2 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CISHQ9NSE2 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CISHQ9NSE2 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CISHQ9NSE2 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.44■□□□□ 0.7
CISHQ9NSE2 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.44■□□□□ 0.7
CISHQ9NSE2 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CISHQ9NSE2 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
CISHQ9NSE2 AC093010.1-201ENST00000473625 1624 ntBASIC19.43■□□□□ 0.7
CISHQ9NSE2 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.43■□□□□ 0.7
CISHQ9NSE2 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CISHQ9NSE2 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC19.43■□□□□ 0.7
CISHQ9NSE2 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CISHQ9NSE2 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC19.43■□□□□ 0.7
CISHQ9NSE2 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.43■□□□□ 0.7
CISHQ9NSE2 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CISHQ9NSE2 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC19.43■□□□□ 0.7
CISHQ9NSE2 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CISHQ9NSE2 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CISHQ9NSE2 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CISHQ9NSE2 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CISHQ9NSE2 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC19.43■□□□□ 0.7
CISHQ9NSE2 KRT18P48-201ENST00000434763 852 ntBASIC19.43■□□□□ 0.7
CISHQ9NSE2 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC19.43■□□□□ 0.7
CISHQ9NSE2 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC19.43■□□□□ 0.7
CISHQ9NSE2 CLN6-204ENST00000564752 900 ntTSL 3 BASIC19.43■□□□□ 0.7
CISHQ9NSE2 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC19.43■□□□□ 0.7
CISHQ9NSE2 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC19.43■□□□□ 0.7
CISHQ9NSE2 AC010331.1-201ENST00000611423 582 ntBASIC19.43■□□□□ 0.7
CISHQ9NSE2 CLN6-214ENST00000636314 442 ntTSL 3 BASIC19.43■□□□□ 0.7
CISHQ9NSE2 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC19.43■□□□□ 0.7
CISHQ9NSE2 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CISHQ9NSE2 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC19.43■□□□□ 0.7
CISHQ9NSE2 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC19.43■□□□□ 0.7
CISHQ9NSE2 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CISHQ9NSE2 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CISHQ9NSE2 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CISHQ9NSE2 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CISHQ9NSE2 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CISHQ9NSE2 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CISHQ9NSE2 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CISHQ9NSE2 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
CISHQ9NSE2 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC19.43■□□□□ 0.7
CISHQ9NSE2 SP100-208ENST00000427101 1922 ntTSL 2 BASIC19.43■□□□□ 0.7
CISHQ9NSE2 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC19.43■□□□□ 0.7
CISHQ9NSE2 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CISHQ9NSE2 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC19.43■□□□□ 0.7
CISHQ9NSE2 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC19.43■□□□□ 0.7
CISHQ9NSE2 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CISHQ9NSE2 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.42■□□□□ 0.7
CISHQ9NSE2 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CISHQ9NSE2 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CISHQ9NSE2 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CISHQ9NSE2 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC19.42■□□□□ 0.7
CISHQ9NSE2 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CISHQ9NSE2 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.42■□□□□ 0.7
CISHQ9NSE2 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.42■□□□□ 0.7
CISHQ9NSE2 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CISHQ9NSE2 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC19.42■□□□□ 0.7
CISHQ9NSE2 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CISHQ9NSE2 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CISHQ9NSE2 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
CISHQ9NSE2 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CISHQ9NSE2 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CISHQ9NSE2 MIR1224-201ENST00000408193 85 ntBASIC19.42■□□□□ 0.7
CISHQ9NSE2 DAP-202ENST00000432074 1048 ntTSL 2 BASIC19.42■□□□□ 0.7
CISHQ9NSE2 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC19.42■□□□□ 0.7
CISHQ9NSE2 AC113404.2-201ENST00000507884 177 ntBASIC19.42■□□□□ 0.7
CISHQ9NSE2 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC19.42■□□□□ 0.7
CISHQ9NSE2 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms