Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 EBPL-204ENST00000378272 766 ntTSL 3 BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 MCRIP2P1-201ENST00000394346 511 ntBASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCX3AQ9NNX9 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.06■□□□□ 0.32
VCX3AQ9NNX9 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCX3AQ9NNX9 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
VCX3AQ9NNX9 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
VCX3AQ9NNX9 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
VCX3AQ9NNX9 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCX3AQ9NNX9 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCX3AQ9NNX9 BANP-201ENST00000286122 2368 ntTSL 5 BASIC17.06■□□□□ 0.32
VCX3AQ9NNX9 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
VCX3AQ9NNX9 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCX3AQ9NNX9 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCX3AQ9NNX9 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCX3AQ9NNX9 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC17.06■□□□□ 0.32
VCX3AQ9NNX9 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VCX3AQ9NNX9 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC17.06■□□□□ 0.32
VCX3AQ9NNX9 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC17.06■□□□□ 0.32
VCX3AQ9NNX9 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCX3AQ9NNX9 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
VCX3AQ9NNX9 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
VCX3AQ9NNX9 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
VCX3AQ9NNX9 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCX3AQ9NNX9 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC17.06■□□□□ 0.32
VCX3AQ9NNX9 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCX3AQ9NNX9 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCX3AQ9NNX9 TFP1-202ENST00000475455 1573 ntBASIC17.06■□□□□ 0.32
VCX3AQ9NNX9 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VCX3AQ9NNX9 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VCX3AQ9NNX9 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCX3AQ9NNX9 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCX3AQ9NNX9 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC17.06■□□□□ 0.32
VCX3AQ9NNX9 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
VCX3AQ9NNX9 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 LINC02199-201ENST00000506655 2702 ntBASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 CROCCP2-202ENST00000412962 2773 ntBASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 GUSBP5-201ENST00000418136 578 ntBASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 AC131281.2-201ENST00000520478 145 ntBASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VCX3AQ9NNX9 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms