Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RPS2P28-201ENST00000314255 741 ntBASIC23.53■■□□□ 1.36
SHANK3Q9BYB0 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
SHANK3Q9BYB0 CRCP-205ENST00000431089 942 ntTSL 2 BASIC23.53■■□□□ 1.36
SHANK3Q9BYB0 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC23.53■■□□□ 1.36
SHANK3Q9BYB0 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
SHANK3Q9BYB0 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
SHANK3Q9BYB0 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC23.53■■□□□ 1.36
SHANK3Q9BYB0 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC23.53■■□□□ 1.36
SHANK3Q9BYB0 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
SHANK3Q9BYB0 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
SHANK3Q9BYB0 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
SHANK3Q9BYB0 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC23.52■■□□□ 1.36
SHANK3Q9BYB0 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
SHANK3Q9BYB0 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC23.52■■□□□ 1.36
SHANK3Q9BYB0 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.36
SHANK3Q9BYB0 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
SHANK3Q9BYB0 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC23.52■■□□□ 1.36
SHANK3Q9BYB0 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC23.52■■□□□ 1.36
SHANK3Q9BYB0 AC105339.3-201ENST00000560043 636 ntBASIC23.52■■□□□ 1.36
SHANK3Q9BYB0 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC23.52■■□□□ 1.36
SHANK3Q9BYB0 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
SHANK3Q9BYB0 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
SHANK3Q9BYB0 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
SHANK3Q9BYB0 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
SHANK3Q9BYB0 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
SHANK3Q9BYB0 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC23.52■■□□□ 1.36
SHANK3Q9BYB0 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
SHANK3Q9BYB0 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC23.52■■□□□ 1.36
SHANK3Q9BYB0 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC23.51■■□□□ 1.35
SHANK3Q9BYB0 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
SHANK3Q9BYB0 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
SHANK3Q9BYB0 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
SHANK3Q9BYB0 PMP22-202ENST00000395936 816 ntTSL 3 BASIC23.51■■□□□ 1.35
SHANK3Q9BYB0 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
SHANK3Q9BYB0 ELK2BP-201ENST00000415014 1224 ntBASIC23.51■■□□□ 1.35
SHANK3Q9BYB0 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC23.51■■□□□ 1.35
SHANK3Q9BYB0 AC002347.1-201ENST00000569543 541 ntBASIC23.51■■□□□ 1.35
SHANK3Q9BYB0 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
SHANK3Q9BYB0 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC23.51■■□□□ 1.35
SHANK3Q9BYB0 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC23.51■■□□□ 1.35
SHANK3Q9BYB0 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC23.51■■□□□ 1.35
SHANK3Q9BYB0 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
SHANK3Q9BYB0 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
SHANK3Q9BYB0 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
SHANK3Q9BYB0 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC23.51■■□□□ 1.35
SHANK3Q9BYB0 PMPCAP1-201ENST00000508114 1576 ntBASIC23.51■■□□□ 1.35
SHANK3Q9BYB0 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC23.51■■□□□ 1.35
SHANK3Q9BYB0 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
SHANK3Q9BYB0 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
SHANK3Q9BYB0 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
SHANK3Q9BYB0 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC23.5■■□□□ 1.35
SHANK3Q9BYB0 COX5A-204ENST00000567270 579 ntTSL 3 BASIC23.5■■□□□ 1.35
SHANK3Q9BYB0 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
SHANK3Q9BYB0 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
SHANK3Q9BYB0 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
SHANK3Q9BYB0 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
SHANK3Q9BYB0 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC23.5■■□□□ 1.35
SHANK3Q9BYB0 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC23.5■■□□□ 1.35
SHANK3Q9BYB0 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC23.5■■□□□ 1.35
SHANK3Q9BYB0 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC23.5■■□□□ 1.35
SHANK3Q9BYB0 AC148477.5-201ENST00000625164 1645 ntBASIC23.5■■□□□ 1.35
SHANK3Q9BYB0 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
SHANK3Q9BYB0 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
SHANK3Q9BYB0 RNA5SP416-201ENST00000516838 111 ntBASIC23.5■■□□□ 1.35
SHANK3Q9BYB0 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC23.5■■□□□ 1.35
SHANK3Q9BYB0 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
SHANK3Q9BYB0 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC23.5■■□□□ 1.35
SHANK3Q9BYB0 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC23.5■■□□□ 1.35
SHANK3Q9BYB0 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC23.49■■□□□ 1.35
SHANK3Q9BYB0 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
SHANK3Q9BYB0 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
SHANK3Q9BYB0 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
SHANK3Q9BYB0 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC23.49■■□□□ 1.35
SHANK3Q9BYB0 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC23.49■■□□□ 1.35
SHANK3Q9BYB0 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC23.49■■□□□ 1.35
SHANK3Q9BYB0 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
SHANK3Q9BYB0 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
SHANK3Q9BYB0 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC23.49■■□□□ 1.35
SHANK3Q9BYB0 INIP-202ENST00000374236 874 ntTSL 2 BASIC23.49■■□□□ 1.35
SHANK3Q9BYB0 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
SHANK3Q9BYB0 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
SHANK3Q9BYB0 AP006288.1-201ENST00000446065 395 ntBASIC23.49■■□□□ 1.35
SHANK3Q9BYB0 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC23.49■■□□□ 1.35
SHANK3Q9BYB0 BX005266.1-201ENST00000473402 457 ntBASIC23.49■■□□□ 1.35
SHANK3Q9BYB0 AC108751.1-201ENST00000490852 363 ntBASIC23.49■■□□□ 1.35
SHANK3Q9BYB0 CIPC-205ENST00000555437 566 ntTSL 3 BASIC23.49■■□□□ 1.35
SHANK3Q9BYB0 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
SHANK3Q9BYB0 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
SHANK3Q9BYB0 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
SHANK3Q9BYB0 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC23.49■■□□□ 1.35
SHANK3Q9BYB0 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC23.48■■□□□ 1.35
SHANK3Q9BYB0 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
SHANK3Q9BYB0 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC23.48■■□□□ 1.35
SHANK3Q9BYB0 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC23.48■■□□□ 1.35
SHANK3Q9BYB0 AP000867.4-201ENST00000641616 219 ntBASIC23.48■■□□□ 1.35
SHANK3Q9BYB0 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
SHANK3Q9BYB0 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
SHANK3Q9BYB0 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC23.48■■□□□ 1.35
SHANK3Q9BYB0 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
SHANK3Q9BYB0 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms