Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC14.13□□□□□ -0.15
CCDC140Q96MF4 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC140Q96MF4 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 AC093010.1-201ENST00000473625 1624 ntBASIC14.12□□□□□ -0.15
CCDC140Q96MF4 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 TSPY5P-201ENST00000426936 936 ntBASIC14.12□□□□□ -0.15
CCDC140Q96MF4 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 AL359075.1-203ENST00000462729 1002 ntBASIC14.12□□□□□ -0.15
CCDC140Q96MF4 SNX5-210ENST00000481323 562 ntTSL 3 BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 AL136038.4-201ENST00000603606 1261 ntBASIC14.12□□□□□ -0.15
CCDC140Q96MF4 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 AC018470.1-201ENST00000624790 3129 ntBASIC14.12□□□□□ -0.15
CCDC140Q96MF4 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC140Q96MF4 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 KIRREL3-AS3-201ENST00000404882 831 ntBASIC14.11□□□□□ -0.15
CCDC140Q96MF4 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 AC104076.2-201ENST00000448912 469 ntBASIC14.11□□□□□ -0.15
CCDC140Q96MF4 KRT18P38-201ENST00000449496 1282 ntBASIC14.11□□□□□ -0.15
CCDC140Q96MF4 HOMER2P1-201ENST00000455653 964 ntBASIC14.11□□□□□ -0.15
CCDC140Q96MF4 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 TK1-205ENST00000590862 642 ntTSL 3 BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 AL391807.1-203ENST00000604392 2365 ntBASIC14.11□□□□□ -0.15
CCDC140Q96MF4 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 SP100-208ENST00000427101 1922 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC14.11□□□□□ -0.15
CCDC140Q96MF4 AC138028.4-201ENST00000564984 1845 ntBASIC14.11□□□□□ -0.15
CCDC140Q96MF4 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
CCDC140Q96MF4 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms