Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
NUDCD3Q8IVD9 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 AC108860.2-201ENST00000562760 2183 ntBASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 MIR935-201ENST00000401179 91 ntBASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 PPP1R14BP5-201ENST00000440334 435 ntBASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
NUDCD3Q8IVD9 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NUDCD3Q8IVD9 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
NUDCD3Q8IVD9 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NUDCD3Q8IVD9 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NUDCD3Q8IVD9 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.15■□□□□ 0.5
NUDCD3Q8IVD9 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
NUDCD3Q8IVD9 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.15■□□□□ 0.5
NUDCD3Q8IVD9 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NUDCD3Q8IVD9 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
NUDCD3Q8IVD9 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NUDCD3Q8IVD9 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
NUDCD3Q8IVD9 MIR564-202ENST00000385049 94 ntBASIC18.15■□□□□ 0.5
NUDCD3Q8IVD9 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NUDCD3Q8IVD9 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
NUDCD3Q8IVD9 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.15■□□□□ 0.5
NUDCD3Q8IVD9 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
NUDCD3Q8IVD9 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
NUDCD3Q8IVD9 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NUDCD3Q8IVD9 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
NUDCD3Q8IVD9 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NUDCD3Q8IVD9 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NUDCD3Q8IVD9 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
NUDCD3Q8IVD9 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
NUDCD3Q8IVD9 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NUDCD3Q8IVD9 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.15■□□□□ 0.5
NUDCD3Q8IVD9 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.15■□□□□ 0.5
NUDCD3Q8IVD9 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
NUDCD3Q8IVD9 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NUDCD3Q8IVD9 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NUDCD3Q8IVD9 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
NUDCD3Q8IVD9 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
NUDCD3Q8IVD9 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
NUDCD3Q8IVD9 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
NUDCD3Q8IVD9 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
NUDCD3Q8IVD9 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.14■□□□□ 0.49
NUDCD3Q8IVD9 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.49
NUDCD3Q8IVD9 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NUDCD3Q8IVD9 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NUDCD3Q8IVD9 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
NUDCD3Q8IVD9 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
NUDCD3Q8IVD9 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
NUDCD3Q8IVD9 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
NUDCD3Q8IVD9 AC006116.8-202ENST00000587620 1550 ntBASIC18.14■□□□□ 0.49
NUDCD3Q8IVD9 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
NUDCD3Q8IVD9 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NUDCD3Q8IVD9 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NUDCD3Q8IVD9 RPS2P4-201ENST00000476944 856 ntBASIC18.14■□□□□ 0.49
NUDCD3Q8IVD9 AP002982.1-201ENST00000492365 877 ntBASIC18.14■□□□□ 0.49
NUDCD3Q8IVD9 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.14■□□□□ 0.49
NUDCD3Q8IVD9 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC18.14■□□□□ 0.49
NUDCD3Q8IVD9 AC011298.2-201ENST00000617989 482 ntBASIC18.14■□□□□ 0.49
NUDCD3Q8IVD9 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.14■□□□□ 0.49
NUDCD3Q8IVD9 AC099398.1-201ENST00000567919 2776 ntBASIC18.14■□□□□ 0.49
NUDCD3Q8IVD9 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NUDCD3Q8IVD9 AC080080.1-201ENST00000625121 2420 ntBASIC18.14■□□□□ 0.49
NUDCD3Q8IVD9 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
NUDCD3Q8IVD9 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.14■□□□□ 0.49
NUDCD3Q8IVD9 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NUDCD3Q8IVD9 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
NUDCD3Q8IVD9 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
NUDCD3Q8IVD9 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
NUDCD3Q8IVD9 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms