Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VRK3Q8IV63 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VRK3Q8IV63 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
VRK3Q8IV63 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.83■□□□□ 0.45
VRK3Q8IV63 MED25-212ENST00000618715 1467 ntTSL 5 BASIC17.83■□□□□ 0.45
VRK3Q8IV63 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
VRK3Q8IV63 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
VRK3Q8IV63 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
VRK3Q8IV63 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
VRK3Q8IV63 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VRK3Q8IV63 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VRK3Q8IV63 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VRK3Q8IV63 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
VRK3Q8IV63 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VRK3Q8IV63 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC17.83■□□□□ 0.45
VRK3Q8IV63 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.83■□□□□ 0.44
VRK3Q8IV63 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
VRK3Q8IV63 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VRK3Q8IV63 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VRK3Q8IV63 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VRK3Q8IV63 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VRK3Q8IV63 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VRK3Q8IV63 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
VRK3Q8IV63 AL031133.1-201ENST00000406807 723 ntBASIC17.83■□□□□ 0.44
VRK3Q8IV63 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.83■□□□□ 0.44
VRK3Q8IV63 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
VRK3Q8IV63 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC17.83■□□□□ 0.44
VRK3Q8IV63 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.83■□□□□ 0.44
VRK3Q8IV63 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.83■□□□□ 0.44
VRK3Q8IV63 LINC01238-205ENST00000567549 1107 ntBASIC17.83■□□□□ 0.44
VRK3Q8IV63 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.83■□□□□ 0.44
VRK3Q8IV63 AC024563.2-201ENST00000603282 481 ntBASIC17.83■□□□□ 0.44
VRK3Q8IV63 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VRK3Q8IV63 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VRK3Q8IV63 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
VRK3Q8IV63 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.83■□□□□ 0.44
VRK3Q8IV63 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VRK3Q8IV63 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
VRK3Q8IV63 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
VRK3Q8IV63 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
VRK3Q8IV63 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.83■□□□□ 0.44
VRK3Q8IV63 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VRK3Q8IV63 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
VRK3Q8IV63 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VRK3Q8IV63 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
VRK3Q8IV63 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.82■□□□□ 0.44
VRK3Q8IV63 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VRK3Q8IV63 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
VRK3Q8IV63 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VRK3Q8IV63 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.82■□□□□ 0.44
VRK3Q8IV63 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VRK3Q8IV63 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VRK3Q8IV63 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VRK3Q8IV63 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
VRK3Q8IV63 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VRK3Q8IV63 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VRK3Q8IV63 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC17.82■□□□□ 0.44
VRK3Q8IV63 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.82■□□□□ 0.44
VRK3Q8IV63 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.82■□□□□ 0.44
VRK3Q8IV63 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.82■□□□□ 0.44
VRK3Q8IV63 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.82■□□□□ 0.44
VRK3Q8IV63 LITAF-220ENST00000620789 692 ntTSL 5 BASIC17.82■□□□□ 0.44
VRK3Q8IV63 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VRK3Q8IV63 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VRK3Q8IV63 AC093010.1-201ENST00000473625 1624 ntBASIC17.82■□□□□ 0.44
VRK3Q8IV63 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.82■□□□□ 0.44
VRK3Q8IV63 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
VRK3Q8IV63 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
VRK3Q8IV63 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
VRK3Q8IV63 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
VRK3Q8IV63 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.82■□□□□ 0.44
VRK3Q8IV63 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VRK3Q8IV63 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VRK3Q8IV63 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.82■□□□□ 0.44
VRK3Q8IV63 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.81■□□□□ 0.44
VRK3Q8IV63 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VRK3Q8IV63 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC17.81■□□□□ 0.44
VRK3Q8IV63 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VRK3Q8IV63 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VRK3Q8IV63 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
VRK3Q8IV63 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VRK3Q8IV63 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
VRK3Q8IV63 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
VRK3Q8IV63 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VRK3Q8IV63 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VRK3Q8IV63 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VRK3Q8IV63 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VRK3Q8IV63 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.81■□□□□ 0.44
VRK3Q8IV63 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.81■□□□□ 0.44
VRK3Q8IV63 MIR662-201ENST00000384847 95 ntBASIC17.81■□□□□ 0.44
VRK3Q8IV63 ZNF444P1-201ENST00000559497 298 ntBASIC17.81■□□□□ 0.44
VRK3Q8IV63 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC17.81■□□□□ 0.44
VRK3Q8IV63 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC17.81■□□□□ 0.44
VRK3Q8IV63 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.81■□□□□ 0.44
VRK3Q8IV63 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VRK3Q8IV63 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VRK3Q8IV63 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
VRK3Q8IV63 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VRK3Q8IV63 AC018470.1-201ENST00000624790 3129 ntBASIC17.81■□□□□ 0.44
VRK3Q8IV63 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms