Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
CCDC144BQ3MJ40 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC144BQ3MJ40 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC144BQ3MJ40 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC21.18■□□□□ 0.98
CCDC144BQ3MJ40 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC144BQ3MJ40 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC144BQ3MJ40 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC144BQ3MJ40 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC144BQ3MJ40 PPIH-202ENST00000372549 327 ntTSL 3 BASIC21.18■□□□□ 0.98
CCDC144BQ3MJ40 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC144BQ3MJ40 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC144BQ3MJ40 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC21.18■□□□□ 0.98
CCDC144BQ3MJ40 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC21.18■□□□□ 0.98
CCDC144BQ3MJ40 KRT8P26-201ENST00000534154 1276 ntBASIC21.18■□□□□ 0.98
CCDC144BQ3MJ40 MIR3917-201ENST00000580971 93 ntBASIC21.18■□□□□ 0.98
CCDC144BQ3MJ40 WDR6-223ENST00000627177 207 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC144BQ3MJ40 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC144BQ3MJ40 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC21.18■□□□□ 0.98
CCDC144BQ3MJ40 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC144BQ3MJ40 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
CCDC144BQ3MJ40 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC144BQ3MJ40 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC144BQ3MJ40 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC144BQ3MJ40 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC21.18■□□□□ 0.98
CCDC144BQ3MJ40 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC21.18■□□□□ 0.98
CCDC144BQ3MJ40 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC144BQ3MJ40 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC144BQ3MJ40 AL391807.1-203ENST00000604392 2365 ntBASIC21.17■□□□□ 0.98
CCDC144BQ3MJ40 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC21.17■□□□□ 0.98
CCDC144BQ3MJ40 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
CCDC144BQ3MJ40 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC144BQ3MJ40 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC144BQ3MJ40 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC144BQ3MJ40 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC144BQ3MJ40 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC144BQ3MJ40 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC144BQ3MJ40 AC246785.2-201ENST00000432512 513 ntBASIC21.17■□□□□ 0.98
CCDC144BQ3MJ40 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC21.17■□□□□ 0.98
CCDC144BQ3MJ40 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC21.17■□□□□ 0.98
CCDC144BQ3MJ40 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
CCDC144BQ3MJ40 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC21.17■□□□□ 0.98
CCDC144BQ3MJ40 AP002414.4-201ENST00000589764 1148 ntBASIC21.17■□□□□ 0.98
CCDC144BQ3MJ40 AL136038.4-201ENST00000603606 1261 ntBASIC21.17■□□□□ 0.98
CCDC144BQ3MJ40 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC144BQ3MJ40 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
CCDC144BQ3MJ40 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC21.17■□□□□ 0.98
CCDC144BQ3MJ40 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC144BQ3MJ40 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC144BQ3MJ40 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC144BQ3MJ40 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC21.17■□□□□ 0.98
CCDC144BQ3MJ40 IRX1P1-201ENST00000438849 1838 ntBASIC21.17■□□□□ 0.98
CCDC144BQ3MJ40 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC144BQ3MJ40 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC144BQ3MJ40 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC144BQ3MJ40 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
CCDC144BQ3MJ40 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC144BQ3MJ40 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC144BQ3MJ40 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
CCDC144BQ3MJ40 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC21.16■□□□□ 0.98
CCDC144BQ3MJ40 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC144BQ3MJ40 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC144BQ3MJ40 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
CCDC144BQ3MJ40 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC144BQ3MJ40 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CCDC144BQ3MJ40 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC21.16■□□□□ 0.98
CCDC144BQ3MJ40 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC144BQ3MJ40 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC144BQ3MJ40 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC144BQ3MJ40 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC21.16■□□□□ 0.98
CCDC144BQ3MJ40 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC144BQ3MJ40 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC144BQ3MJ40 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC144BQ3MJ40 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC144BQ3MJ40 NAA38-203ENST00000575071 553 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC144BQ3MJ40 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC144BQ3MJ40 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC21.16■□□□□ 0.98
CCDC144BQ3MJ40 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC21.16■□□□□ 0.98
CCDC144BQ3MJ40 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC21.16■□□□□ 0.98
CCDC144BQ3MJ40 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC21.16■□□□□ 0.98
CCDC144BQ3MJ40 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC144BQ3MJ40 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
CCDC144BQ3MJ40 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC144BQ3MJ40 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC144BQ3MJ40 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC144BQ3MJ40 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC144BQ3MJ40 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC144BQ3MJ40 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC144BQ3MJ40 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC144BQ3MJ40 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC144BQ3MJ40 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC21.15■□□□□ 0.98
CCDC144BQ3MJ40 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC144BQ3MJ40 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC144BQ3MJ40 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC144BQ3MJ40 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
CCDC144BQ3MJ40 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC144BQ3MJ40 MIR662-201ENST00000384847 95 ntBASIC21.15■□□□□ 0.98
CCDC144BQ3MJ40 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
CCDC144BQ3MJ40 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC21.15■□□□□ 0.98
CCDC144BQ3MJ40 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC144BQ3MJ40 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms