Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC18.18■□□□□ 0.5
MSH3P20585 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSH3P20585 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSH3P20585 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.18■□□□□ 0.5
MSH3P20585 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
MSH3P20585 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSH3P20585 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSH3P20585 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
MSH3P20585 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
MSH3P20585 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSH3P20585 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSH3P20585 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.17■□□□□ 0.5
MSH3P20585 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSH3P20585 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSH3P20585 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.17■□□□□ 0.5
MSH3P20585 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSH3P20585 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSH3P20585 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSH3P20585 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSH3P20585 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSH3P20585 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
MSH3P20585 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC18.17■□□□□ 0.5
MSH3P20585 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.17■□□□□ 0.5
MSH3P20585 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.17■□□□□ 0.5
MSH3P20585 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSH3P20585 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.17■□□□□ 0.5
MSH3P20585 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
MSH3P20585 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.17■□□□□ 0.5
MSH3P20585 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.17■□□□□ 0.5
MSH3P20585 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
MSH3P20585 AL354751.1-201ENST00000412768 1863 ntBASIC18.17■□□□□ 0.5
MSH3P20585 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSH3P20585 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC18.17■□□□□ 0.5
MSH3P20585 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.17■□□□□ 0.5
MSH3P20585 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
MSH3P20585 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.17■□□□□ 0.5
MSH3P20585 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
MSH3P20585 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
MSH3P20585 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
MSH3P20585 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSH3P20585 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
MSH3P20585 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
MSH3P20585 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.16■□□□□ 0.5
MSH3P20585 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.16■□□□□ 0.5
MSH3P20585 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSH3P20585 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MSH3P20585 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSH3P20585 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
MSH3P20585 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSH3P20585 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.16■□□□□ 0.5
MSH3P20585 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.16■□□□□ 0.5
MSH3P20585 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSH3P20585 COPE-203ENST00000351079 907 ntTSL 2 BASIC18.16■□□□□ 0.5
MSH3P20585 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MSH3P20585 PVRIG2P-201ENST00000435460 978 ntBASIC18.16■□□□□ 0.5
MSH3P20585 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC18.16■□□□□ 0.5
MSH3P20585 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSH3P20585 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSH3P20585 NTF6B-201ENST00000591913 560 ntBASIC18.16■□□□□ 0.5
MSH3P20585 FGF14-AS2-201ENST00000606448 1074 ntBASIC18.16■□□□□ 0.5
MSH3P20585 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC18.16■□□□□ 0.5
MSH3P20585 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSH3P20585 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSH3P20585 SDHAP2-201ENST00000455183 2001 ntBASIC18.16■□□□□ 0.5
MSH3P20585 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSH3P20585 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MSH3P20585 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC18.16■□□□□ 0.5
MSH3P20585 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.16■□□□□ 0.5
MSH3P20585 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSH3P20585 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSH3P20585 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSH3P20585 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSH3P20585 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
MSH3P20585 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSH3P20585 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSH3P20585 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSH3P20585 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.15■□□□□ 0.5
MSH3P20585 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.15■□□□□ 0.5
MSH3P20585 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSH3P20585 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
MSH3P20585 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.15■□□□□ 0.5
MSH3P20585 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSH3P20585 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
MSH3P20585 ASL-204ENST00000395331 1538 ntTSL 5 BASIC18.15■□□□□ 0.5
MSH3P20585 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.15■□□□□ 0.5
MSH3P20585 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSH3P20585 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSH3P20585 MIR1224-201ENST00000408193 85 ntBASIC18.15■□□□□ 0.5
MSH3P20585 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC18.15■□□□□ 0.5
MSH3P20585 SAPCD2P2-201ENST00000431719 1174 ntBASIC18.15■□□□□ 0.5
MSH3P20585 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC18.15■□□□□ 0.5
MSH3P20585 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.15■□□□□ 0.5
MSH3P20585 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC18.15■□□□□ 0.5
MSH3P20585 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.15■□□□□ 0.5
MSH3P20585 AL136038.4-201ENST00000603606 1261 ntBASIC18.15■□□□□ 0.5
MSH3P20585 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.15■□□□□ 0.5
MSH3P20585 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.15■□□□□ 0.5
MSH3P20585 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
MSH3P20585 AL162741.1-201ENST00000565563 1558 ntBASIC18.15■□□□□ 0.5
MSH3P20585 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms