Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HOXC11O43248 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC18.55■□□□□ 0.56
HOXC11O43248 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.55■□□□□ 0.56
HOXC11O43248 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
HOXC11O43248 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
HOXC11O43248 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HOXC11O43248 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HOXC11O43248 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.55■□□□□ 0.56
HOXC11O43248 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HOXC11O43248 KRT18P65-201ENST00000439811 1286 ntBASIC18.55■□□□□ 0.56
HOXC11O43248 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC18.55■□□□□ 0.56
HOXC11O43248 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC18.55■□□□□ 0.56
HOXC11O43248 AL662844.1-201ENST00000546340 181 ntBASIC18.55■□□□□ 0.56
HOXC11O43248 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC18.55■□□□□ 0.56
HOXC11O43248 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC18.55■□□□□ 0.56
HOXC11O43248 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HOXC11O43248 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
HOXC11O43248 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.55■□□□□ 0.56
HOXC11O43248 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.55■□□□□ 0.56
HOXC11O43248 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.55■□□□□ 0.56
HOXC11O43248 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HOXC11O43248 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HOXC11O43248 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HOXC11O43248 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HOXC11O43248 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
HOXC11O43248 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HOXC11O43248 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HOXC11O43248 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HOXC11O43248 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
HOXC11O43248 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.54■□□□□ 0.56
HOXC11O43248 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HOXC11O43248 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.54■□□□□ 0.56
HOXC11O43248 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
HOXC11O43248 AF238378.1-201ENST00000526806 358 ntBASIC18.54■□□□□ 0.56
HOXC11O43248 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
HOXC11O43248 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
HOXC11O43248 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HOXC11O43248 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
HOXC11O43248 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.54■□□□□ 0.56
HOXC11O43248 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
HOXC11O43248 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.53■□□□□ 0.56
HOXC11O43248 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.53■□□□□ 0.56
HOXC11O43248 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
HOXC11O43248 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.53■□□□□ 0.56
HOXC11O43248 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
HOXC11O43248 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
HOXC11O43248 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
HOXC11O43248 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
HOXC11O43248 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC18.53■□□□□ 0.56
HOXC11O43248 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
HOXC11O43248 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC18.53■□□□□ 0.56
HOXC11O43248 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
HOXC11O43248 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.53■□□□□ 0.56
HOXC11O43248 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HOXC11O43248 DANCR-204ENST00000444958 709 ntTSL 3 BASIC18.53■□□□□ 0.56
HOXC11O43248 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HOXC11O43248 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC18.53■□□□□ 0.56
HOXC11O43248 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.53■□□□□ 0.56
HOXC11O43248 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.53■□□□□ 0.56
HOXC11O43248 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
HOXC11O43248 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
HOXC11O43248 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HOXC11O43248 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC18.52■□□□□ 0.56
HOXC11O43248 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HOXC11O43248 TP73-AS1-210ENST00000637775 1455 ntBASIC18.52■□□□□ 0.56
HOXC11O43248 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HOXC11O43248 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
HOXC11O43248 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HOXC11O43248 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
HOXC11O43248 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HOXC11O43248 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC18.52■□□□□ 0.56
HOXC11O43248 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.52■□□□□ 0.56
HOXC11O43248 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HOXC11O43248 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HOXC11O43248 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC18.52■□□□□ 0.56
HOXC11O43248 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
HOXC11O43248 MRPL3P1-201ENST00000400109 1033 ntBASIC18.52■□□□□ 0.56
HOXC11O43248 THAP5-204ENST00000438865 868 ntTSL 2 BASIC18.52■□□□□ 0.56
HOXC11O43248 MEG3-211ENST00000452514 461 ntTSL 3 BASIC18.52■□□□□ 0.56
HOXC11O43248 AC009533.2-201ENST00000543664 586 ntBASIC18.52■□□□□ 0.56
HOXC11O43248 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
HOXC11O43248 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC18.52■□□□□ 0.56
HOXC11O43248 AL138831.2-201ENST00000606564 490 ntBASIC18.52■□□□□ 0.56
HOXC11O43248 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HOXC11O43248 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
HOXC11O43248 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HOXC11O43248 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HOXC11O43248 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HOXC11O43248 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
HOXC11O43248 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
HOXC11O43248 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
HOXC11O43248 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.51■□□□□ 0.55
HOXC11O43248 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HOXC11O43248 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC18.51■□□□□ 0.55
HOXC11O43248 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
HOXC11O43248 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
HOXC11O43248 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HOXC11O43248 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HOXC11O43248 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
HOXC11O43248 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms