Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLDN3O15551 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC19.93■□□□□ 0.78
CLDN3O15551 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLDN3O15551 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CLDN3O15551 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLDN3O15551 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC19.93■□□□□ 0.78
CLDN3O15551 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLDN3O15551 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLDN3O15551 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLDN3O15551 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLDN3O15551 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CLDN3O15551 UPK3BP1-201ENST00000428678 509 ntBASIC19.93■□□□□ 0.78
CLDN3O15551 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
CLDN3O15551 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC19.93■□□□□ 0.78
CLDN3O15551 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC19.93■□□□□ 0.78
CLDN3O15551 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC19.93■□□□□ 0.78
CLDN3O15551 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC19.93■□□□□ 0.78
CLDN3O15551 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
CLDN3O15551 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLDN3O15551 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC19.93■□□□□ 0.78
CLDN3O15551 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CLDN3O15551 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC19.93■□□□□ 0.78
CLDN3O15551 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
CLDN3O15551 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
CLDN3O15551 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC19.93■□□□□ 0.78
CLDN3O15551 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.93■□□□□ 0.78
CLDN3O15551 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLDN3O15551 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLDN3O15551 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLDN3O15551 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC19.92■□□□□ 0.78
CLDN3O15551 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLDN3O15551 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLDN3O15551 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC19.92■□□□□ 0.78
CLDN3O15551 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLDN3O15551 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLDN3O15551 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC19.92■□□□□ 0.78
CLDN3O15551 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLDN3O15551 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC19.92■□□□□ 0.78
CLDN3O15551 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLDN3O15551 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CLDN3O15551 LINC01126-201ENST00000623515 1646 ntBASIC19.92■□□□□ 0.78
CLDN3O15551 Z83836.1-201ENST00000624605 1642 ntBASIC19.92■□□□□ 0.78
CLDN3O15551 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.92■□□□□ 0.78
CLDN3O15551 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
CLDN3O15551 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.92■□□□□ 0.78
CLDN3O15551 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLDN3O15551 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CLDN3O15551 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC19.92■□□□□ 0.78
CLDN3O15551 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
CLDN3O15551 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CLDN3O15551 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CLDN3O15551 PPOX-214ENST00000535223 664 ntTSL 3 BASIC19.92■□□□□ 0.78
CLDN3O15551 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC19.92■□□□□ 0.78
CLDN3O15551 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC19.92■□□□□ 0.78
CLDN3O15551 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC19.92■□□□□ 0.78
CLDN3O15551 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC19.92■□□□□ 0.78
CLDN3O15551 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC19.92■□□□□ 0.78
CLDN3O15551 AC005332.3-201ENST00000589904 676 ntBASIC19.92■□□□□ 0.78
CLDN3O15551 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
CLDN3O15551 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
CLDN3O15551 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
CLDN3O15551 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLDN3O15551 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CLDN3O15551 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
CLDN3O15551 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLDN3O15551 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLDN3O15551 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CLDN3O15551 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CLDN3O15551 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLDN3O15551 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC19.91■□□□□ 0.78
CLDN3O15551 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC19.91■□□□□ 0.78
CLDN3O15551 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLDN3O15551 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CLDN3O15551 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CLDN3O15551 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC19.91■□□□□ 0.78
CLDN3O15551 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLDN3O15551 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLDN3O15551 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLDN3O15551 BAALC-202ENST00000306391 243 ntTSL 5 BASIC19.91■□□□□ 0.78
CLDN3O15551 BAALC-204ENST00000330955 222 ntTSL 5 BASIC19.91■□□□□ 0.78
CLDN3O15551 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLDN3O15551 HES2-202ENST00000377836 507 ntTSL 2 BASIC19.91■□□□□ 0.78
CLDN3O15551 IGHGP-201ENST00000390555 1178 ntBASIC19.91■□□□□ 0.78
CLDN3O15551 TSPY22P-201ENST00000427496 604 ntBASIC19.91■□□□□ 0.78
CLDN3O15551 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC19.91■□□□□ 0.78
CLDN3O15551 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC19.91■□□□□ 0.78
CLDN3O15551 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC19.91■□□□□ 0.78
CLDN3O15551 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
CLDN3O15551 GPR32P1-201ENST00000601788 811 ntBASIC19.91■□□□□ 0.78
CLDN3O15551 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLDN3O15551 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLDN3O15551 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
CLDN3O15551 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC19.91■□□□□ 0.78
CLDN3O15551 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLDN3O15551 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CLDN3O15551 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
CLDN3O15551 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLDN3O15551 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CLDN3O15551 ESPNP-201ENST00000270691 2015 ntBASIC19.9■□□□□ 0.78
CLDN3O15551 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms