Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGB3O15347 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGB3O15347 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGB3O15347 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
HMGB3O15347 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGB3O15347 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGB3O15347 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGB3O15347 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC14.71□□□□□ -0.05
HMGB3O15347 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HMGB3O15347 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGB3O15347 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC14.71□□□□□ -0.05
HMGB3O15347 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGB3O15347 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC14.71□□□□□ -0.05
HMGB3O15347 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGB3O15347 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGB3O15347 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGB3O15347 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGB3O15347 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC14.71□□□□□ -0.05
HMGB3O15347 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGB3O15347 AL390719.1-204ENST00000412397 1219 ntBASIC14.71□□□□□ -0.05
HMGB3O15347 KRT18P11-201ENST00000435214 1283 ntBASIC14.71□□□□□ -0.05
HMGB3O15347 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC14.71□□□□□ -0.05
HMGB3O15347 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HMGB3O15347 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
HMGB3O15347 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HMGB3O15347 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
HMGB3O15347 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC14.71□□□□□ -0.05
HMGB3O15347 AC124067.4-201ENST00000519691 2379 ntBASIC14.71□□□□□ -0.05
HMGB3O15347 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
HMGB3O15347 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGB3O15347 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
HMGB3O15347 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGB3O15347 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
HMGB3O15347 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC14.71□□□□□ -0.05
HMGB3O15347 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
HMGB3O15347 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
HMGB3O15347 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC14.71□□□□□ -0.06
HMGB3O15347 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC14.71□□□□□ -0.06
HMGB3O15347 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC14.71□□□□□ -0.06
HMGB3O15347 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC14.71□□□□□ -0.06
HMGB3O15347 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
HMGB3O15347 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
HMGB3O15347 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC14.71□□□□□ -0.06
HMGB3O15347 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC14.71□□□□□ -0.06
HMGB3O15347 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC14.7□□□□□ -0.06
HMGB3O15347 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB3O15347 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB3O15347 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC14.7□□□□□ -0.06
HMGB3O15347 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB3O15347 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB3O15347 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB3O15347 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB3O15347 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB3O15347 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB3O15347 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB3O15347 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC14.7□□□□□ -0.06
HMGB3O15347 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB3O15347 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB3O15347 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB3O15347 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB3O15347 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB3O15347 NOX5-201ENST00000260364 8592 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB3O15347 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
HMGB3O15347 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB3O15347 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
HMGB3O15347 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB3O15347 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB3O15347 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB3O15347 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC14.7□□□□□ -0.06
HMGB3O15347 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB3O15347 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC14.7□□□□□ -0.06
HMGB3O15347 DUX4L16-201ENST00000555130 1264 ntBASIC14.7□□□□□ -0.06
HMGB3O15347 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC14.7□□□□□ -0.06
HMGB3O15347 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC14.7□□□□□ -0.06
HMGB3O15347 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC14.7□□□□□ -0.06
HMGB3O15347 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC14.7□□□□□ -0.06
HMGB3O15347 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB3O15347 AC011767.1-201ENST00000617410 1153 ntBASIC14.7□□□□□ -0.06
HMGB3O15347 BID-214ENST00000617586 542 ntTSL 5 BASIC14.7□□□□□ -0.06
HMGB3O15347 OR2I1P-209ENST00000641730 5365 ntBASIC14.7□□□□□ -0.06
HMGB3O15347 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC14.7□□□□□ -0.06
HMGB3O15347 GOLGA6L5P-202ENST00000515341 1828 ntBASIC14.7□□□□□ -0.06
HMGB3O15347 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB3O15347 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB3O15347 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
HMGB3O15347 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC14.7□□□□□ -0.06
HMGB3O15347 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC14.7□□□□□ -0.06
HMGB3O15347 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB3O15347 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
HMGB3O15347 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB3O15347 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC14.7□□□□□ -0.06
HMGB3O15347 NF2-208ENST00000403435 2568 ntTSL 5 BASIC14.7□□□□□ -0.06
HMGB3O15347 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC14.7□□□□□ -0.06
HMGB3O15347 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HMGB3O15347 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB3O15347 REXO1L9P-201ENST00000604264 2108 ntBASIC14.69□□□□□ -0.06
HMGB3O15347 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
HMGB3O15347 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
HMGB3O15347 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
HMGB3O15347 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms