Protein–RNA interactions for Protein: Q9Y3I0

RTCB, tRNA-splicing ligase RtcB homolog, humanhuman

Known RBP Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTCBQ9Y3I0 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
RTCBQ9Y3I0 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
RTCBQ9Y3I0 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC22.98■■□□□ 1.27
RTCBQ9Y3I0 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC22.98■■□□□ 1.27
RTCBQ9Y3I0 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
RTCBQ9Y3I0 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
RTCBQ9Y3I0 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC22.98■■□□□ 1.27
RTCBQ9Y3I0 AC007967.2-201ENST00000432613 625 ntBASIC22.98■■□□□ 1.27
RTCBQ9Y3I0 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC22.98■■□□□ 1.27
RTCBQ9Y3I0 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
RTCBQ9Y3I0 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC22.98■■□□□ 1.27
RTCBQ9Y3I0 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC22.98■■□□□ 1.27
RTCBQ9Y3I0 LINC02084-201ENST00000606069 1096 ntBASIC22.98■■□□□ 1.27
RTCBQ9Y3I0 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC22.98■■□□□ 1.27
RTCBQ9Y3I0 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC22.98■■□□□ 1.27
RTCBQ9Y3I0 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC22.98■■□□□ 1.27
RTCBQ9Y3I0 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC22.98■■□□□ 1.27
RTCBQ9Y3I0 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
RTCBQ9Y3I0 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC22.97■■□□□ 1.27
RTCBQ9Y3I0 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC22.97■■□□□ 1.27
RTCBQ9Y3I0 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC22.97■■□□□ 1.27
RTCBQ9Y3I0 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC22.97■■□□□ 1.27
RTCBQ9Y3I0 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
RTCBQ9Y3I0 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
RTCBQ9Y3I0 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
RTCBQ9Y3I0 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
RTCBQ9Y3I0 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC22.97■■□□□ 1.27
RTCBQ9Y3I0 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
RTCBQ9Y3I0 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
RTCBQ9Y3I0 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
RTCBQ9Y3I0 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC22.97■■□□□ 1.27
RTCBQ9Y3I0 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
RTCBQ9Y3I0 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC22.97■■□□□ 1.27
RTCBQ9Y3I0 KRT18P65-201ENST00000439811 1286 ntBASIC22.97■■□□□ 1.27
RTCBQ9Y3I0 SRP19-202ENST00000445150 833 ntTSL 2 BASIC22.97■■□□□ 1.27
RTCBQ9Y3I0 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
RTCBQ9Y3I0 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC22.97■■□□□ 1.27
RTCBQ9Y3I0 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC22.97■■□□□ 1.27
RTCBQ9Y3I0 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC22.97■■□□□ 1.27
RTCBQ9Y3I0 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC22.97■■□□□ 1.27
RTCBQ9Y3I0 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC22.97■■□□□ 1.27
RTCBQ9Y3I0 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
RTCBQ9Y3I0 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
RTCBQ9Y3I0 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC22.97■■□□□ 1.27
RTCBQ9Y3I0 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
RTCBQ9Y3I0 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
RTCBQ9Y3I0 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC22.97■■□□□ 1.27
RTCBQ9Y3I0 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
RTCBQ9Y3I0 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC22.96■■□□□ 1.27
RTCBQ9Y3I0 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC22.96■■□□□ 1.27
RTCBQ9Y3I0 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC22.96■■□□□ 1.27
RTCBQ9Y3I0 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
RTCBQ9Y3I0 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC22.96■■□□□ 1.27
RTCBQ9Y3I0 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
RTCBQ9Y3I0 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
RTCBQ9Y3I0 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
RTCBQ9Y3I0 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
RTCBQ9Y3I0 ME2-218ENST00000640965 2476 ntTSL 5 BASIC22.96■■□□□ 1.27
RTCBQ9Y3I0 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
RTCBQ9Y3I0 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC22.96■■□□□ 1.27
RTCBQ9Y3I0 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC22.96■■□□□ 1.27
RTCBQ9Y3I0 MSRA-206ENST00000521209 814 ntTSL 3 BASIC22.96■■□□□ 1.27
RTCBQ9Y3I0 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
RTCBQ9Y3I0 RNF151-202ENST00000569210 853 ntTSL 2 BASIC22.96■■□□□ 1.27
RTCBQ9Y3I0 AC002347.1-201ENST00000569543 541 ntBASIC22.96■■□□□ 1.27
RTCBQ9Y3I0 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC22.96■■□□□ 1.27
RTCBQ9Y3I0 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC22.96■■□□□ 1.27
RTCBQ9Y3I0 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
RTCBQ9Y3I0 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC22.95■■□□□ 1.27
RTCBQ9Y3I0 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC22.95■■□□□ 1.27
RTCBQ9Y3I0 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
RTCBQ9Y3I0 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC22.95■■□□□ 1.26
RTCBQ9Y3I0 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC22.95■■□□□ 1.26
RTCBQ9Y3I0 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
RTCBQ9Y3I0 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC22.95■■□□□ 1.26
RTCBQ9Y3I0 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC22.95■■□□□ 1.26
RTCBQ9Y3I0 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC22.95■■□□□ 1.26
RTCBQ9Y3I0 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
RTCBQ9Y3I0 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC22.95■■□□□ 1.26
RTCBQ9Y3I0 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
RTCBQ9Y3I0 KIRREL3-AS3-201ENST00000404882 831 ntBASIC22.95■■□□□ 1.26
RTCBQ9Y3I0 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC22.95■■□□□ 1.26
RTCBQ9Y3I0 LAGE3P1-201ENST00000425356 484 ntBASIC22.95■■□□□ 1.26
RTCBQ9Y3I0 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC22.95■■□□□ 1.26
RTCBQ9Y3I0 RPS29-206ENST00000557111 488 ntTSL 2 BASIC22.95■■□□□ 1.26
RTCBQ9Y3I0 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
RTCBQ9Y3I0 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
RTCBQ9Y3I0 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC22.95■■□□□ 1.26
RTCBQ9Y3I0 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC22.95■■□□□ 1.26
RTCBQ9Y3I0 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
RTCBQ9Y3I0 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC22.94■■□□□ 1.26
RTCBQ9Y3I0 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC22.94■■□□□ 1.26
RTCBQ9Y3I0 ADK-206ENST00000541550 2222 ntTSL 2 BASIC22.94■■□□□ 1.26
RTCBQ9Y3I0 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC22.94■■□□□ 1.26
RTCBQ9Y3I0 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
RTCBQ9Y3I0 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC22.94■■□□□ 1.26
RTCBQ9Y3I0 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC22.94■■□□□ 1.26
RTCBQ9Y3I0 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
RTCBQ9Y3I0 AC022898.2-201ENST00000616822 1312 ntBASIC22.94■■□□□ 1.26
RTCBQ9Y3I0 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms