Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CNTN3Q9P232 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC19.63■□□□□ 0.73
CNTN3Q9P232 SKP2-204ENST00000508514 821 ntTSL 3 BASIC19.63■□□□□ 0.73
CNTN3Q9P232 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CNTN3Q9P232 AP000867.3-201ENST00000524675 377 ntBASIC19.63■□□□□ 0.73
CNTN3Q9P232 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC19.63■□□□□ 0.73
CNTN3Q9P232 AC012615.1-201ENST00000565797 1299 ntBASIC19.63■□□□□ 0.73
CNTN3Q9P232 PRR29-207ENST00000580752 458 ntTSL 3 BASIC19.63■□□□□ 0.73
CNTN3Q9P232 AL353801.3-201ENST00000609898 542 ntBASIC19.63■□□□□ 0.73
CNTN3Q9P232 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CNTN3Q9P232 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CNTN3Q9P232 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CNTN3Q9P232 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC19.63■□□□□ 0.73
CNTN3Q9P232 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CNTN3Q9P232 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CNTN3Q9P232 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.63■□□□□ 0.73
CNTN3Q9P232 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CNTN3Q9P232 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC19.63■□□□□ 0.73
CNTN3Q9P232 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CNTN3Q9P232 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.63■□□□□ 0.73
CNTN3Q9P232 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CNTN3Q9P232 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CNTN3Q9P232 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CNTN3Q9P232 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CNTN3Q9P232 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
CNTN3Q9P232 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC19.62■□□□□ 0.73
CNTN3Q9P232 LINC00167-201ENST00000530583 1419 ntBASIC19.62■□□□□ 0.73
CNTN3Q9P232 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CNTN3Q9P232 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CNTN3Q9P232 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CNTN3Q9P232 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CNTN3Q9P232 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
CNTN3Q9P232 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC19.62■□□□□ 0.73
CNTN3Q9P232 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC19.62■□□□□ 0.73
CNTN3Q9P232 AC246785.2-201ENST00000432512 513 ntBASIC19.62■□□□□ 0.73
CNTN3Q9P232 NUS1P1-201ENST00000446295 882 ntBASIC19.62■□□□□ 0.73
CNTN3Q9P232 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CNTN3Q9P232 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CNTN3Q9P232 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC19.62■□□□□ 0.73
CNTN3Q9P232 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC19.62■□□□□ 0.73
CNTN3Q9P232 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC19.62■□□□□ 0.73
CNTN3Q9P232 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC19.62■□□□□ 0.73
CNTN3Q9P232 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CNTN3Q9P232 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CNTN3Q9P232 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CNTN3Q9P232 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CNTN3Q9P232 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CNTN3Q9P232 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CNTN3Q9P232 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CNTN3Q9P232 ESPNP-201ENST00000270691 2015 ntBASIC19.61■□□□□ 0.73
CNTN3Q9P232 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CNTN3Q9P232 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
CNTN3Q9P232 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CNTN3Q9P232 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CNTN3Q9P232 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CNTN3Q9P232 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC19.61■□□□□ 0.73
CNTN3Q9P232 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CNTN3Q9P232 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CNTN3Q9P232 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CNTN3Q9P232 KIRREL3-AS3-201ENST00000404882 831 ntBASIC19.61■□□□□ 0.73
CNTN3Q9P232 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CNTN3Q9P232 TSPY12P-201ENST00000421279 868 ntBASIC19.61■□□□□ 0.73
CNTN3Q9P232 AL450487.1-201ENST00000426799 995 ntBASIC19.61■□□□□ 0.73
CNTN3Q9P232 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
CNTN3Q9P232 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CNTN3Q9P232 PRELID1P1-202ENST00000567272 903 ntBASIC19.61■□□□□ 0.73
CNTN3Q9P232 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC19.61■□□□□ 0.73
CNTN3Q9P232 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC19.61■□□□□ 0.73
CNTN3Q9P232 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
CNTN3Q9P232 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CNTN3Q9P232 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
CNTN3Q9P232 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
CNTN3Q9P232 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
CNTN3Q9P232 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CNTN3Q9P232 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CNTN3Q9P232 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC19.6■□□□□ 0.73
CNTN3Q9P232 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CNTN3Q9P232 LINC00602-201ENST00000629776 2065 ntBASIC19.6■□□□□ 0.73
CNTN3Q9P232 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CNTN3Q9P232 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CNTN3Q9P232 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CNTN3Q9P232 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CNTN3Q9P232 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CNTN3Q9P232 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC19.6■□□□□ 0.73
CNTN3Q9P232 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC19.6■□□□□ 0.73
CNTN3Q9P232 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC19.6■□□□□ 0.73
CNTN3Q9P232 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC19.6■□□□□ 0.73
CNTN3Q9P232 AP005901.3-202ENST00000581653 237 ntBASIC19.6■□□□□ 0.73
CNTN3Q9P232 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC19.6■□□□□ 0.73
CNTN3Q9P232 Z69720.1-201ENST00000601483 472 ntBASIC19.6■□□□□ 0.73
CNTN3Q9P232 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CNTN3Q9P232 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CNTN3Q9P232 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CNTN3Q9P232 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.6■□□□□ 0.73
CNTN3Q9P232 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CNTN3Q9P232 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
CNTN3Q9P232 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC19.6■□□□□ 0.73
CNTN3Q9P232 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CNTN3Q9P232 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CNTN3Q9P232 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms