Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC18.3■□□□□ 0.52
CPNE1Q99829 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CPNE1Q99829 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CPNE1Q99829 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CPNE1Q99829 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CPNE1Q99829 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CPNE1Q99829 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CPNE1Q99829 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.3■□□□□ 0.52
CPNE1Q99829 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CPNE1Q99829 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CPNE1Q99829 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CPNE1Q99829 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CPNE1Q99829 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CPNE1Q99829 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CPNE1Q99829 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
CPNE1Q99829 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CPNE1Q99829 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CPNE1Q99829 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CPNE1Q99829 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.29■□□□□ 0.52
CPNE1Q99829 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CPNE1Q99829 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CPNE1Q99829 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CPNE1Q99829 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
CPNE1Q99829 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC18.29■□□□□ 0.52
CPNE1Q99829 AP003041.3-201ENST00000527151 707 ntBASIC18.29■□□□□ 0.52
CPNE1Q99829 AC009065.1-201ENST00000564055 1225 ntBASIC18.29■□□□□ 0.52
CPNE1Q99829 AL353719.1-201ENST00000566847 864 ntBASIC18.29■□□□□ 0.52
CPNE1Q99829 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC18.29■□□□□ 0.52
CPNE1Q99829 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC18.29■□□□□ 0.52
CPNE1Q99829 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CPNE1Q99829 LTB4R2-202ENST00000528054 3092 ntBASIC18.29■□□□□ 0.52
CPNE1Q99829 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.29■□□□□ 0.52
CPNE1Q99829 AC093010.1-201ENST00000473625 1624 ntBASIC18.29■□□□□ 0.52
CPNE1Q99829 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CPNE1Q99829 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CPNE1Q99829 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CPNE1Q99829 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CPNE1Q99829 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CPNE1Q99829 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CPNE1Q99829 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.29■□□□□ 0.52
CPNE1Q99829 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CPNE1Q99829 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CPNE1Q99829 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CPNE1Q99829 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE1Q99829 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE1Q99829 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE1Q99829 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
CPNE1Q99829 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE1Q99829 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE1Q99829 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE1Q99829 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE1Q99829 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.28■□□□□ 0.52
CPNE1Q99829 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE1Q99829 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.28■□□□□ 0.52
CPNE1Q99829 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE1Q99829 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE1Q99829 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE1Q99829 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE1Q99829 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
CPNE1Q99829 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC18.28■□□□□ 0.52
CPNE1Q99829 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.28■□□□□ 0.52
CPNE1Q99829 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.28■□□□□ 0.52
CPNE1Q99829 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE1Q99829 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.28■□□□□ 0.52
CPNE1Q99829 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE1Q99829 CR769767.2-201ENST00000622735 460 ntBASIC18.28■□□□□ 0.52
CPNE1Q99829 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE1Q99829 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
CPNE1Q99829 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.28■□□□□ 0.52
CPNE1Q99829 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.28■□□□□ 0.52
CPNE1Q99829 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE1Q99829 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.28■□□□□ 0.52
CPNE1Q99829 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE1Q99829 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.28■□□□□ 0.52
CPNE1Q99829 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CPNE1Q99829 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CPNE1Q99829 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CPNE1Q99829 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
CPNE1Q99829 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CPNE1Q99829 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CPNE1Q99829 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.27■□□□□ 0.52
CPNE1Q99829 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CPNE1Q99829 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CPNE1Q99829 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CPNE1Q99829 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.52
CPNE1Q99829 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CPNE1Q99829 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CPNE1Q99829 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CPNE1Q99829 AP003071.4-201ENST00000562276 1284 ntBASIC18.27■□□□□ 0.52
CPNE1Q99829 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CPNE1Q99829 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CPNE1Q99829 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
CPNE1Q99829 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
CPNE1Q99829 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
CPNE1Q99829 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE1Q99829 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE1Q99829 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE1Q99829 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE1Q99829 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CPNE1Q99829 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms