Protein–RNA interactions for Protein: Q92544

TM9SF4, Transmembrane 9 superfamily member 4, humanhuman

Predictions only

Length 642 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4Q92544 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.26■□□□□ 0.35
TM9SF4Q92544 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.26■□□□□ 0.35
TM9SF4Q92544 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TM9SF4Q92544 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
TM9SF4Q92544 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
TM9SF4Q92544 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TM9SF4Q92544 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TM9SF4Q92544 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TM9SF4Q92544 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TM9SF4Q92544 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TM9SF4Q92544 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC17.26■□□□□ 0.35
TM9SF4Q92544 TSSC2-201ENST00000450217 709 ntBASIC17.26■□□□□ 0.35
TM9SF4Q92544 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC17.26■□□□□ 0.35
TM9SF4Q92544 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC17.26■□□□□ 0.35
TM9SF4Q92544 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC17.26■□□□□ 0.35
TM9SF4Q92544 AC092119.3-201ENST00000612618 583 ntBASIC17.26■□□□□ 0.35
TM9SF4Q92544 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TM9SF4Q92544 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
TM9SF4Q92544 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
TM9SF4Q92544 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TM9SF4Q92544 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TM9SF4Q92544 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
TM9SF4Q92544 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
TM9SF4Q92544 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TM9SF4Q92544 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TM9SF4Q92544 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
TM9SF4Q92544 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.26■□□□□ 0.35
TM9SF4Q92544 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TM9SF4Q92544 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TM9SF4Q92544 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
TM9SF4Q92544 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC17.25■□□□□ 0.35
TM9SF4Q92544 GAS2L1P1-201ENST00000420145 1480 ntBASIC17.25■□□□□ 0.35
TM9SF4Q92544 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.25■□□□□ 0.35
TM9SF4Q92544 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
TM9SF4Q92544 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TM9SF4Q92544 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TM9SF4Q92544 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TM9SF4Q92544 SDHAP1-207ENST00000440850 2000 ntBASIC17.25■□□□□ 0.35
TM9SF4Q92544 AL354751.1-201ENST00000412768 1863 ntBASIC17.25■□□□□ 0.35
TM9SF4Q92544 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
TM9SF4Q92544 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
TM9SF4Q92544 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
TM9SF4Q92544 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TM9SF4Q92544 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TM9SF4Q92544 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TM9SF4Q92544 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TM9SF4Q92544 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
TM9SF4Q92544 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC17.25■□□□□ 0.35
TM9SF4Q92544 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.25■□□□□ 0.35
TM9SF4Q92544 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.25■□□□□ 0.35
TM9SF4Q92544 NPAP1P7-201ENST00000613027 823 ntBASIC17.25■□□□□ 0.35
TM9SF4Q92544 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TM9SF4Q92544 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.25■□□□□ 0.35
TM9SF4Q92544 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
TM9SF4Q92544 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
TM9SF4Q92544 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TM9SF4Q92544 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TM9SF4Q92544 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.25■□□□□ 0.35
TM9SF4Q92544 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
TM9SF4Q92544 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TM9SF4Q92544 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TM9SF4Q92544 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TM9SF4Q92544 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TM9SF4Q92544 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.25■□□□□ 0.35
TM9SF4Q92544 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.25■□□□□ 0.35
TM9SF4Q92544 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TM9SF4Q92544 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.25■□□□□ 0.35
TM9SF4Q92544 Z98044.1-201ENST00000632503 1764 ntBASIC17.25■□□□□ 0.35
TM9SF4Q92544 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.25■□□□□ 0.35
TM9SF4Q92544 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TM9SF4Q92544 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.25■□□□□ 0.35
TM9SF4Q92544 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TM9SF4Q92544 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TM9SF4Q92544 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TM9SF4Q92544 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
TM9SF4Q92544 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.24■□□□□ 0.35
TM9SF4Q92544 KRT8P7-201ENST00000533003 1432 ntBASIC17.24■□□□□ 0.35
TM9SF4Q92544 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TM9SF4Q92544 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TM9SF4Q92544 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
TM9SF4Q92544 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TM9SF4Q92544 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TM9SF4Q92544 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TM9SF4Q92544 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TM9SF4Q92544 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC17.24■□□□□ 0.35
TM9SF4Q92544 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
TM9SF4Q92544 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC17.24■□□□□ 0.35
TM9SF4Q92544 SPDYE13P-201ENST00000445314 798 ntBASIC17.24■□□□□ 0.35
TM9SF4Q92544 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC17.24■□□□□ 0.35
TM9SF4Q92544 AC092597.1-201ENST00000487352 616 ntBASIC17.24■□□□□ 0.35
TM9SF4Q92544 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC17.24■□□□□ 0.35
TM9SF4Q92544 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
TM9SF4Q92544 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TM9SF4Q92544 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.24■□□□□ 0.35
TM9SF4Q92544 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TM9SF4Q92544 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC17.24■□□□□ 0.35
TM9SF4Q92544 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
TM9SF4Q92544 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TM9SF4Q92544 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.24■□□□□ 0.35
TM9SF4Q92544 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms