Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SCUBE3Q8IX30 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SCUBE3Q8IX30 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC19.22■□□□□ 0.67
SCUBE3Q8IX30 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC19.22■□□□□ 0.67
SCUBE3Q8IX30 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC19.22■□□□□ 0.67
SCUBE3Q8IX30 AC087388.1-201ENST00000571370 1112 ntBASIC19.22■□□□□ 0.67
SCUBE3Q8IX30 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC19.22■□□□□ 0.67
SCUBE3Q8IX30 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC19.22■□□□□ 0.67
SCUBE3Q8IX30 AC083849.1-201ENST00000615227 514 ntBASIC19.22■□□□□ 0.67
SCUBE3Q8IX30 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
SCUBE3Q8IX30 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SCUBE3Q8IX30 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SCUBE3Q8IX30 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SCUBE3Q8IX30 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.22■□□□□ 0.67
SCUBE3Q8IX30 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
SCUBE3Q8IX30 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SCUBE3Q8IX30 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SCUBE3Q8IX30 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SCUBE3Q8IX30 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SCUBE3Q8IX30 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCUBE3Q8IX30 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCUBE3Q8IX30 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCUBE3Q8IX30 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCUBE3Q8IX30 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCUBE3Q8IX30 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCUBE3Q8IX30 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC19.21■□□□□ 0.67
SCUBE3Q8IX30 SPDYE13P-201ENST00000445314 798 ntBASIC19.21■□□□□ 0.67
SCUBE3Q8IX30 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCUBE3Q8IX30 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC19.21■□□□□ 0.67
SCUBE3Q8IX30 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SCUBE3Q8IX30 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC19.21■□□□□ 0.67
SCUBE3Q8IX30 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SCUBE3Q8IX30 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCUBE3Q8IX30 PHGDH-209ENST00000641074 1780 ntBASIC19.21■□□□□ 0.67
SCUBE3Q8IX30 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCUBE3Q8IX30 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCUBE3Q8IX30 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SCUBE3Q8IX30 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCUBE3Q8IX30 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCUBE3Q8IX30 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCUBE3Q8IX30 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCUBE3Q8IX30 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SCUBE3Q8IX30 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
SCUBE3Q8IX30 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCUBE3Q8IX30 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCUBE3Q8IX30 AC135050.7-201ENST00000624508 2218 ntBASIC19.2■□□□□ 0.66
SCUBE3Q8IX30 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
SCUBE3Q8IX30 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SCUBE3Q8IX30 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCUBE3Q8IX30 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCUBE3Q8IX30 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC19.2■□□□□ 0.66
SCUBE3Q8IX30 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
SCUBE3Q8IX30 VENTXP5-201ENST00000523979 775 ntBASIC19.2■□□□□ 0.66
SCUBE3Q8IX30 ZNF444P1-201ENST00000559497 298 ntBASIC19.2■□□□□ 0.66
SCUBE3Q8IX30 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC19.2■□□□□ 0.66
SCUBE3Q8IX30 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
SCUBE3Q8IX30 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
SCUBE3Q8IX30 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
SCUBE3Q8IX30 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCUBE3Q8IX30 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCUBE3Q8IX30 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCUBE3Q8IX30 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SCUBE3Q8IX30 PXK-206ENST00000463280 2825 ntTSL 2 BASIC19.2■□□□□ 0.66
SCUBE3Q8IX30 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
SCUBE3Q8IX30 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SCUBE3Q8IX30 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SCUBE3Q8IX30 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SCUBE3Q8IX30 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SCUBE3Q8IX30 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SCUBE3Q8IX30 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC19.19■□□□□ 0.66
SCUBE3Q8IX30 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SCUBE3Q8IX30 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SCUBE3Q8IX30 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
SCUBE3Q8IX30 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SCUBE3Q8IX30 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SCUBE3Q8IX30 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SCUBE3Q8IX30 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC19.19■□□□□ 0.66
SCUBE3Q8IX30 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
SCUBE3Q8IX30 CLN6-204ENST00000564752 900 ntTSL 3 BASIC19.19■□□□□ 0.66
SCUBE3Q8IX30 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC19.19■□□□□ 0.66
SCUBE3Q8IX30 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
SCUBE3Q8IX30 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC19.19■□□□□ 0.66
SCUBE3Q8IX30 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SCUBE3Q8IX30 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
SCUBE3Q8IX30 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SCUBE3Q8IX30 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SCUBE3Q8IX30 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SCUBE3Q8IX30 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SCUBE3Q8IX30 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
SCUBE3Q8IX30 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
SCUBE3Q8IX30 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC19.18■□□□□ 0.66
SCUBE3Q8IX30 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SCUBE3Q8IX30 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC19.18■□□□□ 0.66
SCUBE3Q8IX30 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SCUBE3Q8IX30 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SCUBE3Q8IX30 MIR662-201ENST00000384847 95 ntBASIC19.18■□□□□ 0.66
SCUBE3Q8IX30 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC19.18■□□□□ 0.66
SCUBE3Q8IX30 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19.18■□□□□ 0.66
SCUBE3Q8IX30 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC19.18■□□□□ 0.66
SCUBE3Q8IX30 AC024563.2-201ENST00000603282 481 ntBASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms