Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 LINC02228-203ENST00000641970 1355 ntBASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 AC026691.1-201ENST00000602502 2017 ntBASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28AQ8IWP9 AC105917.1-201ENST00000506637 2539 ntBASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 CPT2-209ENST00000636935 803 ntTSL 5 BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28AQ8IWP9 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC28AQ8IWP9 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC28AQ8IWP9 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC28AQ8IWP9 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
CCDC28AQ8IWP9 AC138028.4-201ENST00000564984 1845 ntBASIC15.27■□□□□ 0.04
CCDC28AQ8IWP9 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC28AQ8IWP9 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
CCDC28AQ8IWP9 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC28AQ8IWP9 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
CCDC28AQ8IWP9 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC28AQ8IWP9 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC28AQ8IWP9 AC027612.3-201ENST00000413684 1047 ntBASIC15.27■□□□□ 0.04
CCDC28AQ8IWP9 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC28AQ8IWP9 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CCDC28AQ8IWP9 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CCDC28AQ8IWP9 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC15.27■□□□□ 0.03
CCDC28AQ8IWP9 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
CCDC28AQ8IWP9 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC15.27■□□□□ 0.03
CCDC28AQ8IWP9 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC15.27■□□□□ 0.03
CCDC28AQ8IWP9 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC15.27■□□□□ 0.03
CCDC28AQ8IWP9 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
CCDC28AQ8IWP9 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CCDC28AQ8IWP9 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
CCDC28AQ8IWP9 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CCDC28AQ8IWP9 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CCDC28AQ8IWP9 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC15.27■□□□□ 0.03
CCDC28AQ8IWP9 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
CCDC28AQ8IWP9 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CCDC28AQ8IWP9 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CCDC28AQ8IWP9 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
CCDC28AQ8IWP9 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC15.26■□□□□ 0.03
CCDC28AQ8IWP9 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms