Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
LIM2P55344 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIM2P55344 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LIM2P55344 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.36■□□□□ 0.37
LIM2P55344 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIM2P55344 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIM2P55344 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC17.36■□□□□ 0.37
LIM2P55344 KRT18P38-201ENST00000449496 1282 ntBASIC17.36■□□□□ 0.37
LIM2P55344 AC092647.4-201ENST00000457211 535 ntBASIC17.36■□□□□ 0.37
LIM2P55344 AL359075.1-203ENST00000462729 1002 ntBASIC17.36■□□□□ 0.37
LIM2P55344 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LIM2P55344 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIM2P55344 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.36■□□□□ 0.37
LIM2P55344 LTBR-211ENST00000543190 785 ntTSL 3 BASIC17.36■□□□□ 0.37
LIM2P55344 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.36■□□□□ 0.37
LIM2P55344 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIM2P55344 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.36■□□□□ 0.37
LIM2P55344 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LIM2P55344 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIM2P55344 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIM2P55344 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.36■□□□□ 0.37
LIM2P55344 PCDHB18P-201ENST00000524813 2368 ntBASIC17.36■□□□□ 0.37
LIM2P55344 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIM2P55344 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIM2P55344 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LIM2P55344 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.35■□□□□ 0.37
LIM2P55344 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.35■□□□□ 0.37
LIM2P55344 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LIM2P55344 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.35■□□□□ 0.37
LIM2P55344 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.35■□□□□ 0.37
LIM2P55344 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.35■□□□□ 0.37
LIM2P55344 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.35■□□□□ 0.37
LIM2P55344 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIM2P55344 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIM2P55344 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIM2P55344 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
LIM2P55344 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC17.35■□□□□ 0.37
LIM2P55344 FAM8A6P-201ENST00000407496 1135 ntBASIC17.35■□□□□ 0.37
LIM2P55344 PVRIG2P-201ENST00000435460 978 ntBASIC17.35■□□□□ 0.37
LIM2P55344 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIM2P55344 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.35■□□□□ 0.37
LIM2P55344 AC022616.7-201ENST00000525383 220 ntBASIC17.35■□□□□ 0.37
LIM2P55344 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIM2P55344 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC17.35■□□□□ 0.37
LIM2P55344 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.35■□□□□ 0.37
LIM2P55344 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
LIM2P55344 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LIM2P55344 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LIM2P55344 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIM2P55344 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIM2P55344 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.35■□□□□ 0.37
LIM2P55344 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LIM2P55344 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIM2P55344 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIM2P55344 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LIM2P55344 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.35■□□□□ 0.37
LIM2P55344 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LIM2P55344 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIM2P55344 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIM2P55344 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIM2P55344 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIM2P55344 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIM2P55344 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.34■□□□□ 0.37
LIM2P55344 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
LIM2P55344 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LIM2P55344 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LIM2P55344 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC17.34■□□□□ 0.37
LIM2P55344 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC17.34■□□□□ 0.37
LIM2P55344 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.34■□□□□ 0.37
LIM2P55344 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
LIM2P55344 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.34■□□□□ 0.37
LIM2P55344 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.34■□□□□ 0.37
LIM2P55344 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.34■□□□□ 0.37
LIM2P55344 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.34■□□□□ 0.37
LIM2P55344 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LIM2P55344 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LIM2P55344 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.34■□□□□ 0.37
LIM2P55344 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
LIM2P55344 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIM2P55344 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIM2P55344 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.34■□□□□ 0.37
LIM2P55344 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LIM2P55344 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.33■□□□□ 0.37
LIM2P55344 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.33■□□□□ 0.37
LIM2P55344 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.33■□□□□ 0.37
LIM2P55344 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
LIM2P55344 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.33■□□□□ 0.37
LIM2P55344 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.33■□□□□ 0.37
LIM2P55344 GMCL1P1-201ENST00000463439 1581 ntBASIC17.33■□□□□ 0.37
LIM2P55344 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LIM2P55344 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
LIM2P55344 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.33■□□□□ 0.36
LIM2P55344 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIM2P55344 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
LIM2P55344 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIM2P55344 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.33■□□□□ 0.36
LIM2P55344 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.33■□□□□ 0.36
LIM2P55344 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIM2P55344 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIM2P55344 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms