Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
RFX3P48380 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RFX3P48380 AC034236.2-201ENST00000606662 1610 ntBASIC17.19■□□□□ 0.34
RFX3P48380 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RFX3P48380 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RFX3P48380 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RFX3P48380 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RFX3P48380 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.19■□□□□ 0.34
RFX3P48380 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RFX3P48380 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RFX3P48380 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.19■□□□□ 0.34
RFX3P48380 FAM87A-204ENST00000613235 858 ntBASIC17.19■□□□□ 0.34
RFX3P48380 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RFX3P48380 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
RFX3P48380 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.19■□□□□ 0.34
RFX3P48380 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RFX3P48380 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RFX3P48380 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.19■□□□□ 0.34
RFX3P48380 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
RFX3P48380 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
RFX3P48380 AC112777.1-201ENST00000540175 1423 ntBASIC17.19■□□□□ 0.34
RFX3P48380 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RFX3P48380 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.19■□□□□ 0.34
RFX3P48380 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RFX3P48380 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.19■□□□□ 0.34
RFX3P48380 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
RFX3P48380 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
RFX3P48380 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.18■□□□□ 0.34
RFX3P48380 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RFX3P48380 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RFX3P48380 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RFX3P48380 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RFX3P48380 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
RFX3P48380 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RFX3P48380 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.18■□□□□ 0.34
RFX3P48380 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RFX3P48380 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RFX3P48380 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RFX3P48380 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RFX3P48380 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
RFX3P48380 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RFX3P48380 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
RFX3P48380 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
RFX3P48380 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.18■□□□□ 0.34
RFX3P48380 KRT18P23-201ENST00000435622 1283 ntBASIC17.18■□□□□ 0.34
RFX3P48380 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
RFX3P48380 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.18■□□□□ 0.34
RFX3P48380 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.18■□□□□ 0.34
RFX3P48380 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RFX3P48380 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RFX3P48380 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.18■□□□□ 0.34
RFX3P48380 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RFX3P48380 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
RFX3P48380 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RFX3P48380 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RFX3P48380 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RFX3P48380 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RFX3P48380 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.18■□□□□ 0.34
RFX3P48380 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RFX3P48380 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RFX3P48380 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
RFX3P48380 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RFX3P48380 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
RFX3P48380 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC17.17■□□□□ 0.34
RFX3P48380 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RFX3P48380 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
RFX3P48380 AL390961.4-201ENST00000623958 2535 ntBASIC17.17■□□□□ 0.34
RFX3P48380 AC018470.1-201ENST00000624790 3129 ntBASIC17.17■□□□□ 0.34
RFX3P48380 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RFX3P48380 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RFX3P48380 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.17■□□□□ 0.34
RFX3P48380 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
RFX3P48380 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.17■□□□□ 0.34
RFX3P48380 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.17■□□□□ 0.34
RFX3P48380 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
RFX3P48380 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
RFX3P48380 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
RFX3P48380 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
RFX3P48380 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RFX3P48380 HMGA1P5-201ENST00000412453 271 ntBASIC17.17■□□□□ 0.34
RFX3P48380 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.17■□□□□ 0.34
RFX3P48380 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
RFX3P48380 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.17■□□□□ 0.34
RFX3P48380 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.17■□□□□ 0.34
RFX3P48380 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.17■□□□□ 0.34
RFX3P48380 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
RFX3P48380 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.17■□□□□ 0.34
RFX3P48380 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RFX3P48380 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RFX3P48380 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RFX3P48380 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
RFX3P48380 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
RFX3P48380 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RFX3P48380 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.17■□□□□ 0.34
RFX3P48380 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RFX3P48380 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
RFX3P48380 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
RFX3P48380 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.16■□□□□ 0.34
RFX3P48380 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RFX3P48380 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms