Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VCX3AQ9NNX9 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VCX3AQ9NNX9 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VCX3AQ9NNX9 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VCX3AQ9NNX9 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
VCX3AQ9NNX9 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC17.14■□□□□ 0.33
VCX3AQ9NNX9 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VCX3AQ9NNX9 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VCX3AQ9NNX9 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VCX3AQ9NNX9 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC17.14■□□□□ 0.33
VCX3AQ9NNX9 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 LINC00602-201ENST00000629776 2065 ntBASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 UNC93B3-201ENST00000308076 687 ntBASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 AC024257.2-201ENST00000549699 147 ntBASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 AC019069.1-201ENST00000610008 1333 ntBASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.13■□□□□ 0.33
VCX3AQ9NNX9 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VCX3AQ9NNX9 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
VCX3AQ9NNX9 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC17.12■□□□□ 0.33
VCX3AQ9NNX9 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
VCX3AQ9NNX9 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VCX3AQ9NNX9 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC17.12■□□□□ 0.33
VCX3AQ9NNX9 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VCX3AQ9NNX9 HYMAI-201ENST00000635591 3347 ntBASIC17.12■□□□□ 0.33
VCX3AQ9NNX9 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
VCX3AQ9NNX9 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VCX3AQ9NNX9 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VCX3AQ9NNX9 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC17.12■□□□□ 0.33
VCX3AQ9NNX9 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC17.12■□□□□ 0.33
VCX3AQ9NNX9 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VCX3AQ9NNX9 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC17.12■□□□□ 0.33
VCX3AQ9NNX9 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC17.12■□□□□ 0.33
VCX3AQ9NNX9 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
VCX3AQ9NNX9 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC17.12■□□□□ 0.33
VCX3AQ9NNX9 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VCX3AQ9NNX9 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
VCX3AQ9NNX9 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VCX3AQ9NNX9 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
VCX3AQ9NNX9 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VCX3AQ9NNX9 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
VCX3AQ9NNX9 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
VCX3AQ9NNX9 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VCX3AQ9NNX9 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.11■□□□□ 0.33
VCX3AQ9NNX9 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.11■□□□□ 0.33
VCX3AQ9NNX9 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.11■□□□□ 0.33
VCX3AQ9NNX9 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
VCX3AQ9NNX9 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
VCX3AQ9NNX9 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VCX3AQ9NNX9 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VCX3AQ9NNX9 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VCX3AQ9NNX9 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VCX3AQ9NNX9 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VCX3AQ9NNX9 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
VCX3AQ9NNX9 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VCX3AQ9NNX9 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.11■□□□□ 0.33
VCX3AQ9NNX9 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
VCX3AQ9NNX9 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VCX3AQ9NNX9 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC17.11■□□□□ 0.33
VCX3AQ9NNX9 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC17.11■□□□□ 0.33
VCX3AQ9NNX9 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VCX3AQ9NNX9 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VCX3AQ9NNX9 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VCX3AQ9NNX9 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
VCX3AQ9NNX9 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VCX3AQ9NNX9 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
VCX3AQ9NNX9 AC005052.1-201ENST00000625181 2492 ntBASIC17.11■□□□□ 0.33
VCX3AQ9NNX9 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms