Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 PHGDH-209ENST00000641074 1780 ntBASIC18.87■□□□□ 0.61
USP29Q9HBJ7 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP29Q9HBJ7 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP29Q9HBJ7 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP29Q9HBJ7 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 KRT18P23-201ENST00000435622 1283 ntBASIC18.86■□□□□ 0.61
USP29Q9HBJ7 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 AC091076.1-201ENST00000610741 619 ntBASIC18.86■□□□□ 0.61
USP29Q9HBJ7 AL138966.2-201ENST00000621997 464 ntBASIC18.86■□□□□ 0.61
USP29Q9HBJ7 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
USP29Q9HBJ7 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP29Q9HBJ7 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP29Q9HBJ7 AL096828.2-201ENST00000567259 1965 ntBASIC18.85■□□□□ 0.61
USP29Q9HBJ7 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USP29Q9HBJ7 RNF152P1-201ENST00000397754 604 ntBASIC18.85■□□□□ 0.61
USP29Q9HBJ7 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
USP29Q9HBJ7 FAM8A6P-201ENST00000407496 1135 ntBASIC18.85■□□□□ 0.61
USP29Q9HBJ7 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC18.85■□□□□ 0.61
USP29Q9HBJ7 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC18.85■□□□□ 0.61
USP29Q9HBJ7 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC18.85■□□□□ 0.61
USP29Q9HBJ7 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.85■□□□□ 0.61
USP29Q9HBJ7 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP29Q9HBJ7 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.85■□□□□ 0.61
USP29Q9HBJ7 PCDHB18P-201ENST00000524813 2368 ntBASIC18.85■□□□□ 0.61
USP29Q9HBJ7 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.85■□□□□ 0.61
USP29Q9HBJ7 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.85■□□□□ 0.61
USP29Q9HBJ7 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP29Q9HBJ7 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.85■□□□□ 0.61
USP29Q9HBJ7 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USP29Q9HBJ7 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
USP29Q9HBJ7 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP29Q9HBJ7 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USP29Q9HBJ7 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.85■□□□□ 0.61
USP29Q9HBJ7 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USP29Q9HBJ7 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USP29Q9HBJ7 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USP29Q9HBJ7 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USP29Q9HBJ7 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP29Q9HBJ7 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
USP29Q9HBJ7 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.84■□□□□ 0.61
USP29Q9HBJ7 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.84■□□□□ 0.61
USP29Q9HBJ7 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP29Q9HBJ7 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP29Q9HBJ7 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP29Q9HBJ7 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USP29Q9HBJ7 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
USP29Q9HBJ7 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP29Q9HBJ7 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP29Q9HBJ7 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP29Q9HBJ7 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP29Q9HBJ7 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP29Q9HBJ7 MIR149-201ENST00000384879 89 ntBASIC18.84■□□□□ 0.61
USP29Q9HBJ7 PHB2-202ENST00000440277 996 ntTSL 5 BASIC18.84■□□□□ 0.61
USP29Q9HBJ7 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.84■□□□□ 0.61
USP29Q9HBJ7 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.84■□□□□ 0.61
USP29Q9HBJ7 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USP29Q9HBJ7 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC18.84■□□□□ 0.61
USP29Q9HBJ7 AL031432.5-201ENST00000641059 760 ntBASIC18.84■□□□□ 0.61
USP29Q9HBJ7 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP29Q9HBJ7 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
USP29Q9HBJ7 AIRN-201ENST00000601203 4374 ntBASIC18.84■□□□□ 0.61
USP29Q9HBJ7 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP29Q9HBJ7 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP29Q9HBJ7 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USP29Q9HBJ7 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms