Protein–RNA interactions for Protein: Q9BRG1

VPS25, Vacuolar protein-sorting-associated protein 25, humanhuman

Predictions only

Length 176 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25Q9BRG1 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 CNTNAP3P2-201ENST00000617175 3861 ntBASIC12.78□□□□□ -0.36
VPS25Q9BRG1 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 NOX5-201ENST00000260364 8592 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 AC079781.5-202ENST00000641784 3743 ntBASIC12.78□□□□□ -0.36
VPS25Q9BRG1 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 LONRF2P2-201ENST00000439212 571 ntBASIC12.78□□□□□ -0.36
VPS25Q9BRG1 RPS2P35-201ENST00000443417 897 ntBASIC12.78□□□□□ -0.36
VPS25Q9BRG1 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
VPS25Q9BRG1 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
VPS25Q9BRG1 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC12.77□□□□□ -0.36
VPS25Q9BRG1 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
VPS25Q9BRG1 LYSMD4-203ENST00000378904 2122 ntBASIC12.77□□□□□ -0.36
VPS25Q9BRG1 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
VPS25Q9BRG1 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC12.77□□□□□ -0.36
VPS25Q9BRG1 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC12.77□□□□□ -0.36
VPS25Q9BRG1 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.36
VPS25Q9BRG1 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.36
VPS25Q9BRG1 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
VPS25Q9BRG1 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
VPS25Q9BRG1 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.36
VPS25Q9BRG1 PP12613-201ENST00000424958 2230 ntBASIC12.77□□□□□ -0.36
VPS25Q9BRG1 AL137784.3-201ENST00000623858 2288 ntBASIC12.77□□□□□ -0.36
VPS25Q9BRG1 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
VPS25Q9BRG1 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
VPS25Q9BRG1 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC12.77□□□□□ -0.36
VPS25Q9BRG1 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
VPS25Q9BRG1 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
VPS25Q9BRG1 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC12.77□□□□□ -0.37
VPS25Q9BRG1 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
VPS25Q9BRG1 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
VPS25Q9BRG1 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
VPS25Q9BRG1 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
VPS25Q9BRG1 SPCS2P3-201ENST00000500401 656 ntBASIC12.77□□□□□ -0.37
VPS25Q9BRG1 AL592293.1-201ENST00000502889 1188 ntBASIC12.77□□□□□ -0.37
VPS25Q9BRG1 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
VPS25Q9BRG1 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
VPS25Q9BRG1 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC12.77□□□□□ -0.37
VPS25Q9BRG1 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
VPS25Q9BRG1 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC12.77□□□□□ -0.37
VPS25Q9BRG1 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC12.77□□□□□ -0.37
VPS25Q9BRG1 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC12.77□□□□□ -0.37
VPS25Q9BRG1 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC12.77□□□□□ -0.37
VPS25Q9BRG1 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
VPS25Q9BRG1 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC12.77□□□□□ -0.37
VPS25Q9BRG1 TNRC18P2-201ENST00000417666 2714 ntBASIC12.77□□□□□ -0.37
VPS25Q9BRG1 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
VPS25Q9BRG1 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
VPS25Q9BRG1 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC12.77□□□□□ -0.37
VPS25Q9BRG1 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.37
VPS25Q9BRG1 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC12.77□□□□□ -0.37
VPS25Q9BRG1 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.37
VPS25Q9BRG1 AC015656.1-201ENST00000624209 3578 ntBASIC12.77□□□□□ -0.37
VPS25Q9BRG1 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
VPS25Q9BRG1 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.37
VPS25Q9BRG1 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
VPS25Q9BRG1 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
VPS25Q9BRG1 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.37
VPS25Q9BRG1 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC12.77□□□□□ -0.37
VPS25Q9BRG1 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
VPS25Q9BRG1 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
VPS25Q9BRG1 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC12.77□□□□□ -0.37
VPS25Q9BRG1 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
VPS25Q9BRG1 ZDHHC15-201ENST00000373367 5796 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
VPS25Q9BRG1 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
VPS25Q9BRG1 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
VPS25Q9BRG1 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
VPS25Q9BRG1 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
VPS25Q9BRG1 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms