Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
SH3RF1Q7Z6J0 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC20.98■□□□□ 0.95
SH3RF1Q7Z6J0 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SH3RF1Q7Z6J0 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SH3RF1Q7Z6J0 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SH3RF1Q7Z6J0 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC20.98■□□□□ 0.95
SH3RF1Q7Z6J0 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SH3RF1Q7Z6J0 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC20.97■□□□□ 0.95
SH3RF1Q7Z6J0 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
SH3RF1Q7Z6J0 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
SH3RF1Q7Z6J0 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SH3RF1Q7Z6J0 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SH3RF1Q7Z6J0 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SH3RF1Q7Z6J0 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SH3RF1Q7Z6J0 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SH3RF1Q7Z6J0 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC20.97■□□□□ 0.95
SH3RF1Q7Z6J0 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC20.97■□□□□ 0.95
SH3RF1Q7Z6J0 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
SH3RF1Q7Z6J0 AC079776.4-201ENST00000511039 504 ntBASIC20.97■□□□□ 0.95
SH3RF1Q7Z6J0 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC20.97■□□□□ 0.95
SH3RF1Q7Z6J0 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
SH3RF1Q7Z6J0 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SH3RF1Q7Z6J0 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
SH3RF1Q7Z6J0 AC079602.3-201ENST00000623931 403 ntBASIC20.97■□□□□ 0.95
SH3RF1Q7Z6J0 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC20.97■□□□□ 0.95
SH3RF1Q7Z6J0 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
SH3RF1Q7Z6J0 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC20.97■□□□□ 0.95
SH3RF1Q7Z6J0 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
SH3RF1Q7Z6J0 RCC2P3-201ENST00000418112 1537 ntBASIC20.97■□□□□ 0.95
SH3RF1Q7Z6J0 KRT18P1-202ENST00000452408 1331 ntBASIC20.97■□□□□ 0.95
SH3RF1Q7Z6J0 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SH3RF1Q7Z6J0 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SH3RF1Q7Z6J0 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SH3RF1Q7Z6J0 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC20.97■□□□□ 0.95
SH3RF1Q7Z6J0 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SH3RF1Q7Z6J0 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SH3RF1Q7Z6J0 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
SH3RF1Q7Z6J0 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC20.96■□□□□ 0.95
SH3RF1Q7Z6J0 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SH3RF1Q7Z6J0 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC20.96■□□□□ 0.95
SH3RF1Q7Z6J0 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
SH3RF1Q7Z6J0 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
SH3RF1Q7Z6J0 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
SH3RF1Q7Z6J0 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SH3RF1Q7Z6J0 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SH3RF1Q7Z6J0 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SH3RF1Q7Z6J0 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SH3RF1Q7Z6J0 CHCHD2P8-201ENST00000429873 447 ntBASIC20.96■□□□□ 0.95
SH3RF1Q7Z6J0 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC20.96■□□□□ 0.95
SH3RF1Q7Z6J0 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC20.96■□□□□ 0.95
SH3RF1Q7Z6J0 PNN-202ENST00000553331 656 ntTSL 3 BASIC20.96■□□□□ 0.95
SH3RF1Q7Z6J0 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC20.96■□□□□ 0.95
SH3RF1Q7Z6J0 SLC25A6P4-201ENST00000586535 553 ntBASIC20.96■□□□□ 0.95
SH3RF1Q7Z6J0 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC20.96■□□□□ 0.95
SH3RF1Q7Z6J0 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SH3RF1Q7Z6J0 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC20.96■□□□□ 0.95
SH3RF1Q7Z6J0 WDR6-223ENST00000627177 207 ntTSL 2 BASIC20.96■□□□□ 0.95
SH3RF1Q7Z6J0 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC20.96■□□□□ 0.95
SH3RF1Q7Z6J0 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC20.96■□□□□ 0.95
SH3RF1Q7Z6J0 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC20.96■□□□□ 0.95
SH3RF1Q7Z6J0 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SH3RF1Q7Z6J0 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC20.96■□□□□ 0.95
SH3RF1Q7Z6J0 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
SH3RF1Q7Z6J0 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
SH3RF1Q7Z6J0 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SH3RF1Q7Z6J0 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
SH3RF1Q7Z6J0 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC20.95■□□□□ 0.94
SH3RF1Q7Z6J0 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC20.95■□□□□ 0.94
SH3RF1Q7Z6J0 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SH3RF1Q7Z6J0 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SH3RF1Q7Z6J0 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC20.95■□□□□ 0.94
SH3RF1Q7Z6J0 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC20.95■□□□□ 0.94
SH3RF1Q7Z6J0 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SH3RF1Q7Z6J0 AC091304.2-201ENST00000564639 760 ntBASIC20.95■□□□□ 0.94
SH3RF1Q7Z6J0 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC20.95■□□□□ 0.94
SH3RF1Q7Z6J0 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
SH3RF1Q7Z6J0 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
SH3RF1Q7Z6J0 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC20.95■□□□□ 0.94
SH3RF1Q7Z6J0 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SH3RF1Q7Z6J0 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SH3RF1Q7Z6J0 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SH3RF1Q7Z6J0 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SH3RF1Q7Z6J0 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC20.95■□□□□ 0.94
SH3RF1Q7Z6J0 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC20.95■□□□□ 0.94
SH3RF1Q7Z6J0 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC20.95■□□□□ 0.94
SH3RF1Q7Z6J0 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SH3RF1Q7Z6J0 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SH3RF1Q7Z6J0 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SH3RF1Q7Z6J0 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SH3RF1Q7Z6J0 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SH3RF1Q7Z6J0 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC20.94■□□□□ 0.94
SH3RF1Q7Z6J0 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SH3RF1Q7Z6J0 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SH3RF1Q7Z6J0 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
SH3RF1Q7Z6J0 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SH3RF1Q7Z6J0 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
SH3RF1Q7Z6J0 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
SH3RF1Q7Z6J0 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
SH3RF1Q7Z6J0 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC20.94■□□□□ 0.94
SH3RF1Q7Z6J0 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms