Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
KRT39Q6A163 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.78■□□□□ 0.76
KRT39Q6A163 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
KRT39Q6A163 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
KRT39Q6A163 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
KRT39Q6A163 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
KRT39Q6A163 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
KRT39Q6A163 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
KRT39Q6A163 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
KRT39Q6A163 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
KRT39Q6A163 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.78■□□□□ 0.76
KRT39Q6A163 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
KRT39Q6A163 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC19.78■□□□□ 0.76
KRT39Q6A163 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
KRT39Q6A163 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
KRT39Q6A163 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
KRT39Q6A163 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
KRT39Q6A163 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
KRT39Q6A163 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC19.77■□□□□ 0.76
KRT39Q6A163 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
KRT39Q6A163 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC19.77■□□□□ 0.76
KRT39Q6A163 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC19.77■□□□□ 0.76
KRT39Q6A163 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
KRT39Q6A163 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
KRT39Q6A163 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
KRT39Q6A163 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
KRT39Q6A163 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
KRT39Q6A163 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
KRT39Q6A163 RNF152P1-201ENST00000397754 604 ntBASIC19.77■□□□□ 0.76
KRT39Q6A163 STARP1-201ENST00000397973 869 ntBASIC19.77■□□□□ 0.76
KRT39Q6A163 RCN1P1-201ENST00000400413 996 ntBASIC19.77■□□□□ 0.76
KRT39Q6A163 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC19.77■□□□□ 0.76
KRT39Q6A163 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC19.77■□□□□ 0.76
KRT39Q6A163 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC19.77■□□□□ 0.76
KRT39Q6A163 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
KRT39Q6A163 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
KRT39Q6A163 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC19.77■□□□□ 0.76
KRT39Q6A163 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
KRT39Q6A163 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
KRT39Q6A163 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.77■□□□□ 0.75
KRT39Q6A163 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.75
KRT39Q6A163 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC19.76■□□□□ 0.75
KRT39Q6A163 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
KRT39Q6A163 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
KRT39Q6A163 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
KRT39Q6A163 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
KRT39Q6A163 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
KRT39Q6A163 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC19.76■□□□□ 0.75
KRT39Q6A163 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
KRT39Q6A163 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
KRT39Q6A163 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
KRT39Q6A163 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
KRT39Q6A163 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
KRT39Q6A163 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
KRT39Q6A163 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
KRT39Q6A163 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
KRT39Q6A163 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
KRT39Q6A163 AK4P3-201ENST00000418260 669 ntBASIC19.76■□□□□ 0.75
KRT39Q6A163 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC19.76■□□□□ 0.75
KRT39Q6A163 TSPY5P-201ENST00000426936 936 ntBASIC19.76■□□□□ 0.75
KRT39Q6A163 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC19.76■□□□□ 0.75
KRT39Q6A163 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
KRT39Q6A163 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC19.76■□□□□ 0.75
KRT39Q6A163 RBM42-202ENST00000586618 771 ntTSL 3 BASIC19.76■□□□□ 0.75
KRT39Q6A163 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
KRT39Q6A163 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
KRT39Q6A163 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
KRT39Q6A163 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
KRT39Q6A163 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
KRT39Q6A163 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
KRT39Q6A163 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
KRT39Q6A163 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
KRT39Q6A163 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
KRT39Q6A163 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC19.75■□□□□ 0.75
KRT39Q6A163 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
KRT39Q6A163 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
KRT39Q6A163 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
KRT39Q6A163 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC19.75■□□□□ 0.75
KRT39Q6A163 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
KRT39Q6A163 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
KRT39Q6A163 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC19.75■□□□□ 0.75
KRT39Q6A163 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
KRT39Q6A163 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
KRT39Q6A163 SPDYE15P-201ENST00000424157 909 ntBASIC19.75■□□□□ 0.75
KRT39Q6A163 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
KRT39Q6A163 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC19.75■□□□□ 0.75
KRT39Q6A163 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
KRT39Q6A163 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
KRT39Q6A163 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC19.75■□□□□ 0.75
KRT39Q6A163 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
KRT39Q6A163 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
KRT39Q6A163 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC19.75■□□□□ 0.75
KRT39Q6A163 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC19.75■□□□□ 0.75
KRT39Q6A163 AL096828.2-201ENST00000567259 1965 ntBASIC19.75■□□□□ 0.75
KRT39Q6A163 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
KRT39Q6A163 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
KRT39Q6A163 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC19.75■□□□□ 0.75
KRT39Q6A163 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
KRT39Q6A163 AC007613.1-201ENST00000572811 2597 ntBASIC19.75■□□□□ 0.75
KRT39Q6A163 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms