Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HMGCS2P54868 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HMGCS2P54868 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HMGCS2P54868 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC21.1■□□□□ 0.97
HMGCS2P54868 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
HMGCS2P54868 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HMGCS2P54868 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
HMGCS2P54868 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC21.1■□□□□ 0.97
HMGCS2P54868 KRT18P13-201ENST00000400056 1290 ntBASIC21.1■□□□□ 0.97
HMGCS2P54868 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC21.1■□□□□ 0.97
HMGCS2P54868 POLD2P1-201ENST00000511220 997 ntBASIC21.1■□□□□ 0.97
HMGCS2P54868 AC009533.2-201ENST00000543664 586 ntBASIC21.1■□□□□ 0.97
HMGCS2P54868 AC106730.1-201ENST00000566722 1090 ntBASIC21.1■□□□□ 0.97
HMGCS2P54868 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HMGCS2P54868 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC21.1■□□□□ 0.97
HMGCS2P54868 AL138831.2-201ENST00000606564 490 ntBASIC21.1■□□□□ 0.97
HMGCS2P54868 FAM215A-202ENST00000632077 792 ntBASIC21.1■□□□□ 0.97
HMGCS2P54868 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HMGCS2P54868 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
HMGCS2P54868 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HMGCS2P54868 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.1■□□□□ 0.97
HMGCS2P54868 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HMGCS2P54868 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
HMGCS2P54868 INTS4P1-201ENST00000438455 1935 ntBASIC21.1■□□□□ 0.97
HMGCS2P54868 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
HMGCS2P54868 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGCS2P54868 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
HMGCS2P54868 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC21.09■□□□□ 0.97
HMGCS2P54868 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGCS2P54868 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
HMGCS2P54868 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC21.09■□□□□ 0.97
HMGCS2P54868 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC21.09■□□□□ 0.97
HMGCS2P54868 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
HMGCS2P54868 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGCS2P54868 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGCS2P54868 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGCS2P54868 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
HMGCS2P54868 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC21.09■□□□□ 0.97
HMGCS2P54868 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
HMGCS2P54868 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
HMGCS2P54868 AC139887.3-201ENST00000568585 713 ntBASIC21.09■□□□□ 0.97
HMGCS2P54868 LITAF-211ENST00000572255 516 ntTSL 4 BASIC21.09■□□□□ 0.97
HMGCS2P54868 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
HMGCS2P54868 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGCS2P54868 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC21.09■□□□□ 0.97
HMGCS2P54868 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.09■□□□□ 0.97
HMGCS2P54868 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGCS2P54868 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGCS2P54868 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
HMGCS2P54868 PAN3-AS1-201ENST00000563843 1351 ntBASIC21.09■□□□□ 0.97
HMGCS2P54868 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGCS2P54868 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGCS2P54868 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
HMGCS2P54868 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC21.08■□□□□ 0.97
HMGCS2P54868 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC21.08■□□□□ 0.97
HMGCS2P54868 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HMGCS2P54868 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC21.08■□□□□ 0.97
HMGCS2P54868 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
HMGCS2P54868 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
HMGCS2P54868 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC21.08■□□□□ 0.97
HMGCS2P54868 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HMGCS2P54868 RPL18-209ENST00000550645 463 ntTSL 5 BASIC21.08■□□□□ 0.97
HMGCS2P54868 RPL18-214ENST00000552588 559 ntTSL 3 BASIC21.08■□□□□ 0.97
HMGCS2P54868 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC21.08■□□□□ 0.97
HMGCS2P54868 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC21.08■□□□□ 0.97
HMGCS2P54868 PRKN-208ENST00000610470 531 ntTSL 2 BASIC21.08■□□□□ 0.97
HMGCS2P54868 PRKN-209ENST00000612485 225 ntTSL 5 BASIC21.08■□□□□ 0.97
HMGCS2P54868 AC005332.7-201ENST00000614046 2005 ntBASIC21.08■□□□□ 0.97
HMGCS2P54868 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HMGCS2P54868 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
HMGCS2P54868 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.96
HMGCS2P54868 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
HMGCS2P54868 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC21.08■□□□□ 0.96
HMGCS2P54868 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
HMGCS2P54868 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
HMGCS2P54868 LINC01126-201ENST00000623515 1646 ntBASIC21.07■□□□□ 0.96
HMGCS2P54868 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HMGCS2P54868 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC21.07■□□□□ 0.96
HMGCS2P54868 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HMGCS2P54868 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
HMGCS2P54868 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HMGCS2P54868 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HMGCS2P54868 ADM-207ENST00000530439 1839 ntTSL 2 BASIC21.07■□□□□ 0.96
HMGCS2P54868 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
HMGCS2P54868 SCARNA2-201ENST00000458748 420 ntBASIC21.07■□□□□ 0.96
HMGCS2P54868 RPL13AP23-201ENST00000480739 586 ntBASIC21.07■□□□□ 0.96
HMGCS2P54868 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC21.07■□□□□ 0.96
HMGCS2P54868 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC21.07■□□□□ 0.96
HMGCS2P54868 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC21.07■□□□□ 0.96
HMGCS2P54868 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC21.07■□□□□ 0.96
HMGCS2P54868 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
HMGCS2P54868 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HMGCS2P54868 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
HMGCS2P54868 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HMGCS2P54868 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HMGCS2P54868 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
HMGCS2P54868 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC21.06■□□□□ 0.96
HMGCS2P54868 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC21.06■□□□□ 0.96
HMGCS2P54868 COBL-210ENST00000632460 1941 ntTSL 5 BASIC21.06■□□□□ 0.96
HMGCS2P54868 AC125634.1-201ENST00000438758 1403 ntBASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms