Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
NEK3P51956 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
NEK3P51956 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.89■□□□□ 0.61
NEK3P51956 AC067852.2-201ENST00000590513 2313 ntBASIC18.89■□□□□ 0.61
NEK3P51956 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC18.89■□□□□ 0.61
NEK3P51956 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
NEK3P51956 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
NEK3P51956 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC18.89■□□□□ 0.61
NEK3P51956 GAD2-202ENST00000376248 680 ntTSL 5 BASIC18.89■□□□□ 0.61
NEK3P51956 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC18.89■□□□□ 0.61
NEK3P51956 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
NEK3P51956 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC18.89■□□□□ 0.61
NEK3P51956 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
NEK3P51956 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
NEK3P51956 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC18.89■□□□□ 0.61
NEK3P51956 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
NEK3P51956 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.89■□□□□ 0.61
NEK3P51956 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
NEK3P51956 MYC-208ENST00000641036 567 ntBASIC18.89■□□□□ 0.61
NEK3P51956 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
NEK3P51956 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
NEK3P51956 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
NEK3P51956 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
NEK3P51956 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
NEK3P51956 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
NEK3P51956 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.89■□□□□ 0.61
NEK3P51956 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.89■□□□□ 0.61
NEK3P51956 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.89■□□□□ 0.61
NEK3P51956 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
NEK3P51956 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
NEK3P51956 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NEK3P51956 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.88■□□□□ 0.61
NEK3P51956 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.88■□□□□ 0.61
NEK3P51956 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.88■□□□□ 0.61
NEK3P51956 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
NEK3P51956 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.88■□□□□ 0.61
NEK3P51956 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
NEK3P51956 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NEK3P51956 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC18.88■□□□□ 0.61
NEK3P51956 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
NEK3P51956 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.88■□□□□ 0.61
NEK3P51956 AL359075.1-203ENST00000462729 1002 ntBASIC18.88■□□□□ 0.61
NEK3P51956 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC18.88■□□□□ 0.61
NEK3P51956 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC18.88■□□□□ 0.61
NEK3P51956 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
NEK3P51956 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.88■□□□□ 0.61
NEK3P51956 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NEK3P51956 AC138932.1-201ENST00000534164 6830 ntBASIC18.88■□□□□ 0.61
NEK3P51956 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.88■□□□□ 0.61
NEK3P51956 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
NEK3P51956 AL162741.1-201ENST00000565563 1558 ntBASIC18.88■□□□□ 0.61
NEK3P51956 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NEK3P51956 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.88■□□□□ 0.61
NEK3P51956 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
NEK3P51956 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
NEK3P51956 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
NEK3P51956 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NEK3P51956 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NEK3P51956 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.87■□□□□ 0.61
NEK3P51956 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
NEK3P51956 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
NEK3P51956 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
NEK3P51956 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
NEK3P51956 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
NEK3P51956 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
NEK3P51956 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC18.87■□□□□ 0.61
NEK3P51956 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
NEK3P51956 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
NEK3P51956 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.87■□□□□ 0.61
NEK3P51956 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.87■□□□□ 0.61
NEK3P51956 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
NEK3P51956 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
NEK3P51956 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
NEK3P51956 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
NEK3P51956 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC18.87■□□□□ 0.61
NEK3P51956 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
NEK3P51956 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
NEK3P51956 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
NEK3P51956 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NEK3P51956 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NEK3P51956 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NEK3P51956 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.86■□□□□ 0.61
NEK3P51956 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NEK3P51956 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NEK3P51956 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.86■□□□□ 0.61
NEK3P51956 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
NEK3P51956 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.86■□□□□ 0.61
NEK3P51956 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
NEK3P51956 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
NEK3P51956 RCC2P3-201ENST00000418112 1537 ntBASIC18.86■□□□□ 0.61
NEK3P51956 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.86■□□□□ 0.61
NEK3P51956 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
NEK3P51956 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.86■□□□□ 0.61
NEK3P51956 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
NEK3P51956 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
NEK3P51956 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
NEK3P51956 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC18.86■□□□□ 0.61
NEK3P51956 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
NEK3P51956 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC18.86■□□□□ 0.61
NEK3P51956 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms